PDB: 462 resultsInfo pagesStatus searchChemie searchBIRD

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4R71	Structure of the Qbeta holoenzyme complex in the P1211 crystal form Descriptor: 30S ribosomal protein S1, Elongation factor Ts, Elongation factor Tu, ... Authors: Gytz, H, Seweryn, P, Kutlubaeva, Z, Chetverin, A.B, Brodersen, D.E, Knudsen, C.R. Deposit date: 2014-08-26 Release date: 2015-09-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.21 Å) Cite: Structural basis for RNA-genome recognition during bacteriophage Q beta replication. Nucleic Acids Res., 43, 2015
4QJF	X-ray crystal structure of Thermocuccus kodakarensis RNA polymerase Rpp4/Rpo7 (RpoF/RpoE) complex Descriptor: DNA-directed RNA polymerase, subunit E', subunit F Authors: Murakami, K.S. Deposit date: 2014-06-03 Release date: 2014-10-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.312 Å) Cite: Crystal structure of euryarchaeal RNA polymerase and insight into the evolution of RNA polymerase II structure Nat.Commun., 2014
4QIW	Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... Authors: Jun, S.-H, Murakami, K.S. Deposit date: 2014-06-02 Release date: 2014-10-08 Last modified: 2014-11-26 Method: X-RAY DIFFRACTION (3.5 Å) Cite: The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration. Nat Commun, 5, 2014
4Q7J	Complex structure of viral RNA polymerase Descriptor: 30S ribosomal protein S1, Elongation factor Ts, Elongation factor Tu 1, ... Authors: Takeshita, D. Deposit date: 2014-04-25 Release date: 2014-08-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular insights into replication initiation by Q beta replicase using ribosomal protein S1. Nucleic Acids Res., 42, 2014
4NNG	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1 Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015
4NNH	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1 Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015
4NNK	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1 Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.31 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015
4NNI	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1, PYRAZINE-2-CARBOXYLIC ACID Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015
4NBQ	Structure of the polynucleotide phosphorylase (CBU_0852) from Coxiella burnetii Descriptor: Polyribonucleotide nucleotidyltransferase, SULFATE ION Authors: Rudolph, M.J, Cheung, J, Franklin, M.C, Cassidy, M, Gary, E, Burshteyn, F, Love, J. Deposit date: 2013-10-23 Release date: 2015-06-17 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.9138 Å) Cite: Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins, 83, 2015
4MTN	Crystal structure of transcription termination factor NusA from Planctomyces limnophilus DSM 3776 Descriptor: SULFATE ION, Transcription termination factor NusA Authors: Chang, C, Hatzos-Skintges, C, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2013-09-19 Release date: 2013-10-02 Last modified: 2019-07-17 Method: X-RAY DIFFRACTION (2.579 Å) Cite: Crystal structure of transcription termination factor NusA from Planctomyces limnophilus DSM 3776 TO BE PUBLISHED
4BY7	elongating RNA Polymerase II-Bye1 TLD complex Descriptor: , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3', 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. Deposit date: 2013-07-18 Release date: 2013-09-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue. Proc. Natl. Acad. Sci. U.S.A., 110, 2013
4BY1	elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP Descriptor: 5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', ... Authors: Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. Deposit date: 2013-07-17 Release date: 2013-09-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue Proc.Natl.Acad.Sci.USA, 110, 2013
4BXZ	RNA Polymerase II-Bye1 complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. Deposit date: 2013-07-16 Release date: 2013-09-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (4.8 Å) Cite: Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue Proc.Natl.Acad.Sci.USA, 110, 2013
4BXX	Arrested RNA polymerase II-Bye1 complex Descriptor: 5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*AP*CP*CP*TP*GP *GP*TP*GP* BRUP*TP*GP*CP*TP*CP*TP*AP*AP*DC)-3', 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP)-3', 5'-D(*GP*AP*GP*GP*TP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3', ... Authors: Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. Deposit date: 2013-07-16 Release date: 2013-09-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue Proc.Natl.Acad.Sci.USA, 110, 2013
4BBS	Structure of an initially transcribing RNA polymerase II-TFIIB complex Descriptor: 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3', 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3', 5'-R(*AP*UP*AP*UP*CP*AP)-3', ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
4BBR	Structure of RNA polymerase II-TFIIB complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
4V8S	Archaeal RNAP-DNA binary complex at 4.32Ang Descriptor: 5'-D(*AP*TP*AP*GP*AP*GP*TP*AP*TP*AP*AP*GP*AP*TP *AP*G)-3', 5'-D(*TP*CP*TP*TP*AP*TP*AP*CP*TP*CP*TP*AP*TP*CP)-3', DNA-DIRECTED RNA POLYMERASE, ... Authors: Wojtas, M.N, Mogni, M, Millet, O, Bell, S.D, Abrescia, N.G.A. Deposit date: 2012-07-12 Release date: 2014-07-09 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (4.323 Å) Cite: Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA. Nucleic Acids Res., 40, 2012
4AYB	RNAP at 3.2Ang Descriptor: DNA-DIRECTED RNA POLYMERASE, IRON/SULFUR CLUSTER, MAGNESIUM ION, ... Authors: Wojtas, M.N, Mogni, M, Millet, O, Bell, S.D, Abrescia, N.G.A. Deposit date: 2012-06-19 Release date: 2012-08-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.202 Å) Cite: Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA. Nucleic Acids Res., 40, 2012
3J1N	Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module Descriptor: DNA-directed RNA polymerase II subunit RPABC1, DNA-directed RNA polymerase II subunit RPABC2, DNA-directed RNA polymerase II subunit RPABC3, ... Authors: Asturias, F.J, Imasaki, T. Deposit date: 2012-03-29 Release date: 2013-03-06 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (16 Å) Cite: Interaction of the mediator head module with RNA polymerase II. Structure, 20, 2012
4AM3	Crystal structure of C. crescentus PNPase bound to RNA Descriptor: PHOSPHATE ION, POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE, RNA, ... Authors: Hardwick, S.W, Gubbey, T, Hug, I, Jenal, U, Luisi, B.F. Deposit date: 2012-03-07 Release date: 2012-04-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol., 2, 2012
4AIM	Crystal structure of C. crescentus PNPase bound to RNase E recognition peptide Descriptor: PHOSPHATE ION, POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE, RIBONUCLEASE, ... Authors: Hardwick, S.W, Gubbey, T, Hug, I, Jenal, U, Luisi, B.F. Deposit date: 2012-02-10 Release date: 2012-04-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol., 2, 2012
4AID	Crystal structure of C. crescentus PNPase bound to RNase E recognition peptide Descriptor: PHOSPHATE ION, POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE, RIBONUCLEASE, ... Authors: Hardwick, S.W, Gubbey, T, Hug, I, Jenal, U, Luisi, B.F. Deposit date: 2012-02-09 Release date: 2012-04-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure of Caulobacter Crescentus Polynucleotide Phosphorylase Reveals a Mechanism of RNA Substrate Channelling and RNA Degradosome Assembly. Open Biol., 2, 2012
3V11	Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA Descriptor: Initiator tRNA, MAGNESIUM ION, METHIONINE, ... Authors: Mechulam, Y, Schmitt, E. Deposit date: 2011-12-09 Release date: 2012-03-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (5 Å) Cite: Structure of the ternary initiation complex aIF2-GDPNP-methionylated initiator tRNA. Nat.Struct.Mol.Biol., 19, 2012
4A93	RNA Polymerase II elongation complex containing a CPD Lesion Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*T*TTP*TP*TP*CP*C BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP*AP)-3', ... Authors: Walmacq, C, Cheung, A.C.M, Kireeva, M.L, Lubkowska, L, Ye, C, Gotte, D, Strathern, J.N, Carell, T, Cramer, P, Kashlev, M. Deposit date: 2011-11-23 Release date: 2012-03-21 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Mechanism of Translesion Transcription by RNA Polymerase II and its Role in Cellular Resistance to DNA Damage. Mol.Cell, 46, 2012
3J0K	Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ... Authors: Bernecky, C, Grob, P, Ebmeier, C.C, Nogales, E, Taatjes, D.J. Deposit date: 2011-10-04 Release date: 2011-10-19 Last modified: 2018-07-18 Method: ELECTRON MICROSCOPY (36 Å) Cite: Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly. Plos Biol., 9, 2011

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