PDB: 315 件ウェブページステータス検索Chemie searchBIRD

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1A1L	ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE) 分子名称: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3'), PROTEIN (ZIF268 ZINC FINGER PEPTIDE), ... 著者 Elrod-Erickson, M, Benson, T.E, Pabo, C.O. 登録日 1997-12-10 公開日 1998-06-17 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure, 6, 1998
5YEG	Crystal structure of CTCF ZFs4-8-Hs5-1a complex 分子名称: DNA (5'-D(*AP*CP*TP*TP*TP*AP*AP*CP*CP*AP*GP*CP*AP*GP*AP*GP*GP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*CP*CP*TP*CP*TP*GP*CP*TP*GP*GP*TP*TP*AP*AP*AP*G)-3'), Transcriptional repressor CTCF, ... 著者 Yin, M, Wang, J, Wang, M, Li, X. 登録日 2017-09-17 公開日 2017-11-29 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites Cell Res., 27, 2017
5YEL	Crystal structure of CTCF ZFs6-11-gb7CSE 分子名称: DNA (26-MER), Transcriptional repressor CTCF, ZINC ION 著者 Yin, M, Wang, J, Wang, M, Li, X, Wang, Y. 登録日 2017-09-18 公開日 2017-11-29 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites Cell Res., 27, 2017
5YJ3	Crystal structure of TZAP and telomeric DNA complex 分子名称: DNA (5'-D(*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), Telomere zinc finger-associated protein, ... 著者 Li, F, Zhao, Y. 登録日 2017-10-07 公開日 2017-12-06 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.845 Å) 主引用文献 The 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA. Cell Res., 28, 2018
1ARD	STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR DNA BINDING 分子名称: YEAST TRANSCRIPTION FACTOR ADR1, ZINC ION 著者 Hoffman, R.C, Xu, R.X, Horvath, S.J, Herriott, J.R, Klevit, R.E. 登録日 1993-10-01 公開日 1994-01-31 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Structures of DNA-binding mutant zinc finger domains: implications for DNA binding. Protein Sci., 2, 1993
5YEH	Crystal structure of CTCF ZFs4-8-eCBS 分子名称: DNA (5'-D(*AP*CP*GP*GP*TP*TP*TP*CP*CP*GP*CP*TP*AP*GP*AP*GP*GP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*CP*CP*TP*CP*TP*AP*GP*CP*GP*GP*AP*AP*AP*CP*CP*G)-3'), Transcriptional repressor CTCF, ... 著者 Yin, M, Wang, J, Wang, M, Li, X, Wang, Y. 登録日 2017-09-17 公開日 2017-11-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.328 Å) 主引用文献 Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites Cell Res., 27, 2017
1ARE	STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR DNA BINDING 分子名称: YEAST TRANSCRIPTION FACTOR ADR1, ZINC ION 著者 Hoffman, R.C, Xu, R.X, Horvath, S.J, Herriott, J.R, Klevit, R.E. 登録日 1993-10-01 公開日 1994-01-31 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Structures of DNA-binding mutant zinc finger domains: implications for DNA binding. Protein Sci., 2, 1993
5YEF	Crystal structure of CTCF ZFs2-8-Hs5-1aE 分子名称: DNA (27-MER), Transcriptional repressor CTCF, ZINC ION 著者 Yin, M, Wang, J, Wang, M, Li, X, Wang, Y. 登録日 2017-09-17 公開日 2017-11-29 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.807 Å) 主引用文献 Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites Cell Res., 27, 2017
6B0O	Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet TGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.552 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
6B0P	Zinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with 3' Triplet GGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(P*AP*CP*CP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*GP*GP*T)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.077 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
6B0Q	Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT 分子名称: DNA (5'-D(P*AP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*TP*T)-3'), SULFATE ION, ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.794 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
6B0R	Zinc finger Domain of WT1(-KTS form) with M342R Mutation and 14+1mer Oligonucleotide with 3' Triplet TGG 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*GP*GP*TP*TP*A)-3'), DNA (5'-D(P*TP*AP*AP*CP*CP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-09-14 公開日 2018-01-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.818 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
6BLW	Zinc finger Domain of WT1(+KTS form) with M342R Mutation and 17+1mer Oligonucleotide with Triplet GGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*AP*AP*CP*CP*CP*TP*CP*CP*CP*AP*TP*TP*TP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*AP*AP*TP*GP*GP*GP*AP*GP*GP*GP*TP*T)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-11-11 公開日 2018-01-03 最終更新日 2018-05-16 実験手法 X-RAY DIFFRACTION (1.835 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
8SSS	ZnFs 1-7 of CCCTC-binding factor (CTCF) Complexed with 23mer 分子名称: 1,2-ETHANEDIOL, DNA Strand (23mer) I, DNA Strand (23mer) II, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SSQ	ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 35mer DNA 35-4 分子名称: DNA (35-MER) Strand 2, DNA (35-MER) Strand I, SODIUM ION, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SSR	ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 35mer DNA 35-20 分子名称: DNA (35-MER) Strand I, DNA (35-MER) Strand II, SODIUM ION, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SST	ZnFs 1-7 of CCCTC-binding factor (CTCF) K365T Mutant Complexed with 23mer 分子名称: 1,2-ETHANEDIOL, DNA Strand (23mer) I, DNA Strand (23mer) II, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8SSU	ZnFs 3-11 of CCCTC-binding factor (CTCF) Complexed with 19mer DNA 分子名称: 1,2-ETHANEDIOL, DNA (19-MER) Strand I, DNA (19-MER) Strand II, ... 著者 Horton, J.R, Yang, J, Cheng, X. 登録日 2023-05-08 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Structures of CTCF-DNA complexes including all 11 zinc fingers. Nucleic Acids Res., 51, 2023
8VG3	Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure 分子名称: ZINC ION, Zinc finger protein 711 著者 Rua, A.J, Alexandrescu, A.T. 登録日 2023-12-22 公開日 2024-01-17 実験手法 SOLUTION NMR 主引用文献 Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure To Be Published
5K5H	Homo sapiens CCCTC-binding factor (CTCF) ZnF4-7 and DNA complex structure 分子名称: DNA (5'-D(*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*C)-3'), DNA (5'-D(*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*G)-3'), Transcriptional repressor CTCF, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-05-23 公開日 2017-05-24 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.108 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
5KE8	mouse Klf4 E446P ZnF1-3 and MpG/MpG sequence DNA complex structure 分子名称: DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3'), Krueppel-like factor 4, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-06-09 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res., 44, 2016
5K5J	Homo sapiens CCCTC-binding factor (CTCF) ZnF5-8 and DNA complex structure in space group P41212 分子名称: ACETATE ION, DNA (5'-D(*CP*CP*CP*TP*GP*CP*TP*GP*GP*CP*AP*AP*C)-3'), DNA (5'-D(*TP*TP*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*G)-3'), ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-05-23 公開日 2017-05-24 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.287 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
5KE9	mouse Klf4 E446P ZnF1-3 and TpG/CpA sequence DNA complex structure 分子名称: DNA (5'-D(*GP*AP*GP*GP*TP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*AP*CP*CP*TP*C)-3'), Krueppel-like factor 4, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-06-09 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.336 Å) 主引用文献 Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res., 44, 2016
5KEA	mouse Klf4 ZnF1-3 (E446D) and CpG/CpG sequence DNA complex structure: Form I 分子名称: DNA (5'-D(*GP*AP*GP*GP*CP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*GP*CP*CP*TP*C)-3'), Krueppel-like factor 4, ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-06-09 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.458 Å) 主引用文献 Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res., 44, 2016
5KL4	Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with formylated DNA 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5FC)P*GP*T)-3'), ... 著者 Hashimoto, H, Cheng, X. 登録日 2016-06-23 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.783 Å) 主引用文献 Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications. Nucleic Acids Res., 44, 2016

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