PDB: 316 件ウェブページステータス検索Chemie searchBIRD

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4LDV	Crystal structure of the DNA binding domain of A. thailana auxin response factor 1 分子名称: Auxin response factor 1, CHLORIDE ION, FORMIC ACID, ... 著者 boer, D.R, Freire-Rios, A, van den Berg, W.M.A, Weijers, D, Coll, M. 登録日 2013-06-25 公開日 2014-02-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors. Cell(Cambridge,Mass.), 156, 2014
4HLY	The complex crystal structure of the DNA binding domain of vIRF-1 from the oncogenic KSHV with DNA 分子名称: 5'-D(*GP*CP*GP*TP*CP*GP*AP*GP*AP*CP*GP*C)-3', K9 著者 Hew, K, Venkatachalam, R. 登録日 2012-10-17 公開日 2013-03-13 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor. Nucleic Acids Res., 41, 2013
4HZF	structure of the wild type Catabolite gene Activator Protein 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, GLYCEROL, ... 著者 Pohl, E, Townsend, P.D, Rodgers, T, Burnell, D, McLeish, T.C.B, Wilson, M.R, Cann, M. 登録日 2012-11-15 公開日 2013-10-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Modulation of global low-frequency motions underlies allosteric regulation: demonstration in CRP/FNR family transcription factors. Plos Biol., 11, 2013
4ETL	Crystallographic structure of phenylalanine hydroxylase from Chromobacterium violaceum F258A mutation 分子名称: COBALT (II) ION, Phenylalanine-4-hydroxylase 著者 Ronau, J.A, Paul, L.P, Corn, I.R, Wagner, K.T, Abu-Omar, M.M, Das, C. 登録日 2012-04-24 公開日 2013-05-08 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 An additional substrate binding site in a bacterial phenylalanine hydroxylase. Eur.Biophys.J., 42, 2013
4I0B	structure of the mutant Catabolite gene activator protein H160L 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator 著者 Pohl, E, Townsend, P.D, Rodgers, T, Burnell, D, McLeish, T.C.B, Wilson, M.R, Cann, M.J. 登録日 2012-11-16 公開日 2013-10-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Modulation of global low-frequency motions underlies allosteric regulation: demonstration in CRP/FNR family transcription factors. Plos Biol., 11, 2013
4POY	Engineered Dual Specific VHH antibody 分子名称: VHH-metal 著者 Fanning, S.W, Walter, R, Horn, J.R. 登録日 2014-02-26 公開日 2014-09-24 最終更新日 2014-10-22 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural basis of an engineered dual-specific antibody: conformational diversity leads to a hypervariable loop metal-binding site. Protein Eng.Des.Sel., 27, 2014
4PPT	Engineered Dual Specific VHH Antibody in Complex with a Nickel (II) Ion 分子名称: Engineered single domain VHH antibody, NICKEL (II) ION, SULFATE ION 著者 Fanning, S.W, Walter, R, Horn, J.R. 登録日 2014-02-27 公開日 2014-09-03 最終更新日 2014-10-22 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural basis of an engineered dual-specific antibody: conformational diversity leads to a hypervariable loop metal-binding site. Protein Eng.Des.Sel., 27, 2014
4FFL	PylC in complex with L-lysine 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, CARBONATE ION, ... 著者 Quitterer, F, List, A, Beck, P, Bacher, A, Groll, M. 登録日 2012-06-01 公開日 2012-09-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Biosynthesis of the 22nd genetically encoded amino acid pyrrolysine: structure and reaction mechanism of PylC at 1.5A resolution. J.Mol.Biol., 424, 2012
4F8D	Crystal Structure of an R46A mutant of the Restriction-Modification Controller Protein C.Esp1396I (Monoclinic Form) 分子名称: Regulatory protein, SODIUM ION, SULFATE ION 著者 Martin, R.N.A, McGeehan, J.E, Kneale, G.G. 登録日 2012-05-17 公開日 2013-04-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I. Plos One, 9, 2014
4FBI	Crystal Structure of an R46A mutant of the Restriction-Modification Controller Protein C.Esp1396I (Trigonal Form) 分子名称: GLYCEROL, Regulatory protein 著者 Martin, R.N.A, McGeehan, J.E, Kneale, G.G. 登録日 2012-05-23 公開日 2013-04-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I. Plos One, 9, 2014
4S2X	Structure of E. coli RppH bound to RNA and two magnesium ions 分子名称: MAGNESIUM ION, RNA (5'-R(*(APC)*GP*U)-3'), RNA pyrophosphohydrolase, ... 著者 Vasilyev, N, Serganov, A. 登録日 2015-01-23 公開日 2015-02-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structures of RNA Complexes with the Escherichia coli RNA Pyrophosphohydrolase RppH Unveil the Basis for Specific 5'-End-dependent mRNA Decay. J.Biol.Chem., 290, 2015
5BK9	AAD-1 Bound to the Vanadyl Ion and Succinate 分子名称: (R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase, PHOSPHATE ION, SUCCINIC ACID, ... 著者 Ongpipattanakul, C, Chekan, J.R. 登録日 2019-06-01 公開日 2019-06-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants. Proc.Natl.Acad.Sci.USA, 116, 2019
4GOB	Low pH Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, Least Evolved Ancestor (LEA) 分子名称: Kaede-type Fluorescent Protein 著者 Kim, H, Grunkemeyer, T.J, Chen, L, Fromme, R, Wachter, R.M. 登録日 2012-08-19 公開日 2013-07-31 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Acid-base catalysis and crystal structures of a least evolved ancestral GFP-like protein undergoing green-to-red photoconversion. Biochemistry, 52, 2013
4H2G	Human ecto-5'-nucleotidase (CD73): crystal form II (open) in complex with adenosine 分子名称: 5'-nucleotidase, ADENOSINE, CALCIUM ION, ... 著者 Straeter, N, Knapp, K.M, Zebisch, M, Pippel, J. 登録日 2012-09-12 公開日 2012-11-28 最終更新日 2012-12-26 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal Structure of the Human Ecto-5'-Nucleotidase (CD73): Insights into the Regulation of Purinergic Signaling. Structure, 20, 2012
4YWK	Pyrococcus furiosus MCM N-terminal domain with Zinc-binding subdomain B deleted 分子名称: Cell division control protein 21 著者 Froelich, C.A, Enemark, E.J. 登録日 2015-03-20 公開日 2015-09-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 MCM ring hexamerization is a prerequisite for DNA-binding. Nucleic Acids Res., 43, 2015
4Q6N	Structural analysis of the tripeptide-bound form of Helicobacter pylori Csd4, a D,L-carboxypeptidase 分子名称: CALCIUM ION, Conserved hypothetical secreted protein, GLYCEROL, ... 著者 Kim, H.S, Kim, J, Im, H.N, An, D.R, Lee, M, Hesek, D, Mobashery, S, Kim, J.Y, Cho, K, Yoon, H.J, Han, B.W, Lee, B.I, Suh, S.W. 登録日 2014-04-23 公開日 2014-11-05 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structural basis for the recognition of muramyltripeptide by Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the helical cell shape Acta Crystallogr.,Sect.D, 70, 2014
3V30	Crystal Structure of the Peptide Bound Complex of the Ankyrin Repeat Domains of Human RFXANK 分子名称: DNA-binding protein RFX5, DNA-binding protein RFXANK 著者 Lam, R, Xu, C, Bian, C.B, Kania, J, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC) 登録日 2011-12-12 公開日 2012-04-04 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Sequence-Specific Recognition of a PxLPxI/L Motif by an Ankyrin Repeat Tumbler Lock. Sci.Signal., 5, 2012
4H1Y	Human ecto-5'-nucleotidase (CD73): crystal form II (open) in complex with PSB11552 分子名称: 2,2'-[(2-{[2-({[(2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}amino)ethyl]amino}-2-oxoethyl)imino]diacetic acid (non-preferred name), 5'-nucleotidase, CALCIUM ION, ... 著者 Pippel, J, Zebisch, M, Knapp, K, Straeter, N. 登録日 2012-09-11 公開日 2012-11-28 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Crystal Structure of the Human Ecto-5'-Nucleotidase (CD73): Insights into the Regulation of Purinergic Signaling. Structure, 20, 2012
3UES	Crystal structure of alpha-1,3/4-fucosidase from Bifidobacterium longum subsp. infantis complexed with deoxyfuconojirimycin 分子名称: (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL, 1,2-ETHANEDIOL, Alpha-1,3/4-fucosidase, ... 著者 Sakurama, H, Fushinobu, S, Yoshida, E, Honda, Y, Hidaka, M, Ashida, H, Kitaoka, M, Katayama, T, Yamamoto, K, Kumagai, H. 登録日 2011-10-31 公開日 2012-04-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 1,3-1,4-alpha-L-fucosynthase that specifically introduces Lewis a/x antigens into type-1/2 chains J.Biol.Chem., 287, 2012
3WG4	Crystal structure of Agrocybe cylindracea galectin mutant (N46A) with blood type A antigen tetraose 分子名称: DI(HYDROXYETHYL)ETHER, Galactoside-binding lectin, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Kuwabara, N, Hu, D, Tateno, H, Makio, H, Hirabayashi, J, Kato, R. 登録日 2013-07-25 公開日 2013-11-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett., 587, 2013
4Q6M	Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase 分子名称: CALCIUM ION, Conserved hypothetical secreted protein, GLYCEROL 著者 Kim, H.S, Kim, J, Im, H.N, An, D.R, Lee, M, Hesek, D, Mobashery, S, Kim, J.Y, Cho, K, Yoon, H.J, Han, B.W, Lee, B.I, Suh, S.W. 登録日 2014-04-23 公開日 2014-11-05 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural basis for the recognition of muramyltripeptide by Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the helical cell shape Acta Crystallogr.,Sect.D, 70, 2014
6HIK	X-ray structure of TEAD4(Y429H) mutant) complexed with YAP (wildtype): Molecular and structural characterization of a TEAD mutation at the origin of Sveinsson's chorioretinal atrophy 分子名称: MYRISTIC ACID, PHOSPHATE ION, Transcriptional coactivator YAP1, ... 著者 Kallen, J. 登録日 2018-08-30 公開日 2019-04-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Molecular and structural characterization of a TEAD mutation at the origin of Sveinsson's chorioretinal atrophy. Febs J., 286, 2019
4GPZ	Crystal structure of human B type phosphoglycerate mutase H11 phosphorylated form 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Phosphoglycerate mutase 1 著者 He, C, Zhou, L, Zhang, L. 登録日 2012-08-22 公開日 2013-05-22 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Tyr26 phosphorylation of PGAM1 provides a metabolic advantage to tumours by stabilizing the active conformation. Nat Commun, 4, 2013
8EMQ	Mouse apoferritin heavy chain with zinc determined using single-particle cryo-EM with Apollo camera. 分子名称: FE (III) ION, Ferritin heavy chain, N-terminally processed, ... 著者 Peng, R, Fu, X, Mendez, J.H, Randolph, P.H, Bammes, B, Stagg, S.M. 登録日 2022-09-28 公開日 2022-12-21 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (1.66 Å) 主引用文献 Characterizing the resolution and throughput of the Apollo direct electron detector. J Struct Biol X, 7, 2023
4XLO	Crystal Structure of EncM (crystallized with 4 mM NADPH) 分子名称: FAD-dependent oxygenase EncM, FLAVIN-ADENINE DINUCLEOTIDE 著者 Teufel, R. 登録日 2015-01-13 公開日 2015-01-28 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement. Nature, 503, 2013

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