4Q6M

Structural analysis of the apo-form of Helicobacter pylori Csd4, a D,L-carboxypeptidase

Summary for 4Q6M

Related4Q6N 4Q6O 4Q6P 4Q6Q
DescriptorConserved hypothetical secreted protein, CALCIUM ION, GLYCEROL, ... (4 entities in total)
Functional Keywordsm14 metallopeptidase, d, l-carboxypeptidase, peptidoglycan, csd5, hydrolase
Biological sourceHelicobacter pylori
Total number of polymer chains1
Total molecular weight50126.61
Authors
Kim, H.S.,Kim, J.,Im, H.N.,An, D.R.,Lee, M.,Hesek, D.,Mobashery, S.,Kim, J.Y.,Cho, K.,Yoon, H.J.,Han, B.W.,Lee, B.I.,Suh, S.W. (deposition date: 2014-04-23, release date: 2014-11-05, Last modification date: 2014-11-19)
Primary citation
Kim, H.S.,Kim, J.,Im, H.N.,An, D.R.,Lee, M.,Hesek, D.,Mobashery, S.,Kim, J.Y.,Cho, K.,Yoon, H.J.,Han, B.W.,Lee, B.I.,Suh, S.W.
Structural basis for the recognition of muramyltripeptide by Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the helical cell shape
Acta Crystallogr.,Sect.D, 70:2800-2812, 2014
PubMed: 25372672 (PDB entries with the same primary citation)
DOI: 10.1107/S1399004714018732
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.6 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.218400.3%5.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload