AAD-1 Bound to the Vanadyl Ion and Succinate

Summary for 5BK9

Descriptor(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase, SUCCINIC ACID, oxovanadium(2+), ... (5 entities in total)
Functional Keywordsaryloxyalkanoate dioxygenase, herbicide degradation, biosynthetic protein, oxidoreductase
Biological sourceDelftia acidovorans (Pseudomonas acidovorans)
Total number of polymer chains2
Total molecular weight66947.07
Ongpipattanakul, C.,Chekan, J.R. (deposition date: 2019-06-01, release date: 2019-06-12, Last modification date: 2020-01-01)
Primary citation
Chekan, J.R.,Ongpipattanakul, C.,Wright, T.R.,Zhang, B.,Bollinger Jr., J.M.,Rajakovich, L.J.,Krebs, C.,Cicchillo, R.M.,Nair, S.K.
Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants.
Proc.Natl.Acad.Sci.USA, 116:13299-13304, 2019
PubMed: 31209034 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.1900711116
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2171 0.4% 1.1% 5.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
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