Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2RBQ
DownloadVisualize
BU of 2rbq by Molmil
3-methylbenzylazide in complex with T4 L99A/M102Q
Descriptor: 1-(azidomethyl)-3-methylbenzene, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-19
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.633 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing.
J.Mol.Biol., 377, 2008
6BSK
DownloadVisualize
BU of 6bsk by Molmil
Human PIM1 kinase in complex with compound 12b
Descriptor: 1,2-ETHANEDIOL, 4-{6-[6-(propan-2-ylamino)-1H-indazol-1-yl]pyrazin-2-yl}benzoic acid, SULFATE ION, ...
Authors:Ferguson, A.D.
Deposit date:2017-12-03
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.573 Å)
Cite:Discovery of 2,6-disubstituted pyrazine derivatives as inhibitors of CK2 and PIM kinases.
Bioorg. Med. Chem. Lett., 28, 2018
7CSN
DownloadVisualize
BU of 7csn by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 1.00 A resolution
Descriptor: Peptidyl-tRNA hydrolase
Authors:Viswanathan, V, Sharma, P, Singh, P.K, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2020-08-15
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1 Å)
Cite:Crystal structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii at 1.00 A resolution
To Be Published
6ETD
DownloadVisualize
BU of 6etd by Molmil
The Structure of the Mo-insertase domain Cnx1E from Arabidopsis thaliana in complex with AMP
Descriptor: 1,2-ETHANEDIOL, ACETYL GROUP, ADENOSINE MONOPHOSPHATE, ...
Authors:Krausze, J.
Deposit date:2017-10-26
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.723 Å)
Cite:The functional principle of eukaryotic molybdenum insertases.
Biochem. J., 475, 2018
7CGP
DownloadVisualize
BU of 7cgp by Molmil
Cryo-EM structure of the human mitochondrial translocase TIM22 complex at 3.7 angstrom.
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Acylglycerol kinase, mitochondrial, ...
Authors:Qi, L, Wang, Q, Guan, Z, Yan, C, Yin, P.
Deposit date:2020-07-01
Release date:2020-10-14
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of the human mitochondrial translocase TIM22 complex.
Cell Res., 31, 2021
7SS8
DownloadVisualize
BU of 7ss8 by Molmil
Human P300 complexed with a proline-based inhibitor
Descriptor: 1,2-ETHANEDIOL, 1-[1-(4-chlorophenyl)cyclopentane-1-carbonyl]-N-{[3-(methylcarbamoyl)phenyl]methyl}-D-prolinamide, Histone acetyltransferase p300, ...
Authors:Shewchuk, L.M, Reid, R.A.
Deposit date:2021-11-10
Release date:2022-11-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of Proline-Based p300/CBP Inhibitors Using DNA-Encoded Library Technology in Combination with High-Throughput Screening.
J.Med.Chem., 65, 2022
6H8V
DownloadVisualize
BU of 6h8v by Molmil
Beta-phosphoglucomutase from Lactococcus lactis in an open conformer in the P21 spacegroup to 1.8 A.
Descriptor: 1,2-ETHANEDIOL, 1,3-PROPANDIOL, Beta-phosphoglucomutase, ...
Authors:Robertson, A.J, Bisson, C, Waltho, J.P.
Deposit date:2018-08-03
Release date:2020-08-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase.
To Be Published
6H93
DownloadVisualize
BU of 6h93 by Molmil
Beta-phosphoglucomutase from Lactococcus lactis with inorganic phosphate bound in an open conformer to 1.8 A.
Descriptor: 1,2-ETHANEDIOL, 1,3-PROPANDIOL, ACETATE ION, ...
Authors:Robertson, A.J, Bisson, C, Waltho, J.P.
Deposit date:2018-08-03
Release date:2020-08-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase.
To Be Published
5YT3
DownloadVisualize
BU of 5yt3 by Molmil
Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 S218D and S222D mutant
Descriptor: MAGNESIUM ION, Mitogen-activated protein kinase kinase 1, isoform CRA_d, ...
Authors:Nakae, S, Doko, K, Tada, T, Shirai, T.
Deposit date:2017-11-16
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 S218D and S222D mutant
To Be Published
6HA6
DownloadVisualize
BU of 6ha6 by Molmil
Factor Inhibiting HIF (FIH) in complex with zinc, NOG and TRPV3 (220-246)
Descriptor: GLYCEROL, Hypoxia-inducible factor 1-alpha inhibitor, N-OXALYLGLYCINE, ...
Authors:Leissing, T.M, Clifton, I.J, Saward, B.G, Lu, X, Hopkinson, R.J, Schofield, C.J.
Deposit date:2018-08-07
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Factor Inhibiting HIF (FIH) in complex with zinc, NOG and TRPV3 (220-246)
To Be Published
9F2H
DownloadVisualize
BU of 9f2h by Molmil
Crystal structure of SARS-CoV-2 N-protein C-terminal domain in complex with riluzole
Descriptor: 1,2-ETHANEDIOL, 6-(trifluoromethoxy)-1,3-benzothiazol-2-amine, Nucleoprotein, ...
Authors:Marquez-Monino, M.A, Gonzalez, B, Perez-Canadillas, J.M.
Deposit date:2024-04-23
Release date:2024-11-13
Last modified:2025-01-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The ALS drug riluzole binds to the C-terminal domain of SARS-CoV-2 nucleocapsid protein and has antiviral activity.
Structure, 33, 2025
5GYG
DownloadVisualize
BU of 5gyg by Molmil
Crystal structure of ENZbleach xylanase T28C+T60C mutant with three N-teminal residue truncation
Descriptor: Endo-1,4-beta-xylanase
Authors:Chitnumsub, P, Jaruwat, A, Boonyapakorn, K.
Deposit date:2016-09-22
Release date:2017-09-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure-based protein engineering for thermostable and alkaliphilic enhancement of endo-beta-1,4-xylanase for applications in pulp bleaching.
J. Biotechnol., 259, 2017
6QL2
DownloadVisualize
BU of 6ql2 by Molmil
Crystal structure of chimeric carbonic anhydrase VI with ethoxzolamide.
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-ethoxy-1,3-benzothiazole-2-sulfonamide, ...
Authors:Smirnov, A, Manakova, E, Grazulis, S.
Deposit date:2019-01-31
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Engineered Carbonic Anhydrase VI-Mimic Enzyme Switched the Structure and Affinities of Inhibitors.
Sci Rep, 9, 2019
6BRE
DownloadVisualize
BU of 6bre by Molmil
Hen Egg-White Lysozyme cocrystallized with Cadmium sulphate using CuKalpha source.
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
Authors:Sakon, J, Caviness, P, Jack, T, Pickens, J.B, Reed, P, Ruth, C.
Deposit date:2017-11-30
Release date:2018-01-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Hen Egg-White Lysozyme (HEWL) cocrystallized with Cadmium sulphate.
To Be Published
5K6X
DownloadVisualize
BU of 5k6x by Molmil
Sidekick-2 immunoglobulin domains 1-4, crystal form 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Goodman, K.M, Mannepalli, S, Honig, B, Shapiro, L.
Deposit date:2016-05-25
Release date:2016-09-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of sidekick-mediated cell-cell adhesion and specificity.
Elife, 5, 2016
8RRZ
DownloadVisualize
BU of 8rrz by Molmil
Crystal structure of SYK kinase in complex with compound 1
Descriptor: GLYCEROL, N-[(2S)-1-(azetidin-1-yl)propan-2-yl]-3-{2-[(3,5-dimethoxyphenyl)amino]pyrimidin-4-yl}-1-methyl-1H-pyrazole-5-carboxamide, Tyrosine-protein kinase SYK
Authors:Canevari, G.
Deposit date:2024-01-24
Release date:2024-04-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Discovery and optimization of 4-pyrazolyl-2-aminopyrimidine derivatives as potent spleen tyrosine kinase (SYK) inhibitors.
Eur.J.Med.Chem., 270, 2024
6QLY
DownloadVisualize
BU of 6qly by Molmil
IDOL FERM domain
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase MYLIP, SULFATE ION
Authors:Martinelli, L, Sixma, T.K.
Deposit date:2019-02-01
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural analysis of the LDL receptor-interacting FERM domain in the E3 ubiquitin ligase IDOL reveals an obscured substrate-binding site.
J.Biol.Chem., 295, 2020
9D0G
DownloadVisualize
BU of 9d0g by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with O-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Descriptor: (4S,5aS,8S,8aR)-4-(2-methylpropyl)-N-[(1S,5Z,7R,8R,9R,10R,11S,12R)-10,11,12-trihydroxy-7-methyl-2,13-dioxabicyclo[7.3.1]tridec-5-en-8-yl]octahydro-2H-oxepino[2,3-c]pyrrole-8-carboxamide (non-preferred name), 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Aleksandrova, E.V, Wu, K.J.Y, Robinson, P.J, Benedetto, A.E, Yu, M, Tresco, B.I.C, See, D.N.Y, Jiang, T, Ramkissoon, A, Dunand, C.F, Svetlov, M.S, Lee, J, Myers, A.G, Polikanov, Y.S.
Deposit date:2024-08-07
Release date:2025-08-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Why Sulfur is Important in Lincosamide Antibiotics.
Chem, 11, 2025
6F4U
DownloadVisualize
BU of 6f4u by Molmil
Crystal structure of reactive loop cleaved kallistatin at 1.9 angstrom resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Zhou, A, Wei, Z, Lin, F.
Deposit date:2017-11-30
Release date:2018-12-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human Kallistatin
To Be Published
5LZ4
DownloadVisualize
BU of 5lz4 by Molmil
Fragment-based inhibitors of Lipoprotein associated Phospholipase A2
Descriptor: 5-[2-(4,4-dimethyl-2-oxidanylidene-pyrrolidin-1-yl)ethoxy]-2-fluoranyl-benzenecarbonitrile, CHLORIDE ION, Platelet-activating factor acetylhydrolase
Authors:Woolford, A, Day, P.
Deposit date:2016-09-29
Release date:2016-12-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Fragment-Based Approach to the Development of an Orally Bioavailable Lactam Inhibitor of Lipoprotein-Associated Phospholipase A2 (Lp-PLA2).
J. Med. Chem., 59, 2016
6HB6
DownloadVisualize
BU of 6hb6 by Molmil
Crystal structure of E. coli tyrRS in complex with 5'-O-(N-L-tyrosyl)sulfamoyl-uridine
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Tyrosine--tRNA ligase, ...
Authors:De Graef, S, Pang, L, Strelkov, S.V, Weeks, S.D.
Deposit date:2018-08-09
Release date:2019-04-17
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Comparative analysis of pyrimidine substituted aminoacyl-sulfamoyl nucleosides as potential inhibitors targeting class I aminoacyl-tRNA synthetases.
Eur.J.Med.Chem., 173, 2019
6Q4U
DownloadVisualize
BU of 6q4u by Molmil
KlenTaq DNA pol in a closed ternary complex with 7-deaza-7-(2-(2-hydroxyethoxy)-N-(prop-2-yn-1-yl)acetamide)-2-dATP
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*AP*CP*TP*GP*TP*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*(DOC))-3'), ...
Authors:Kropp, H.M, Diederichs, K, Marx, A.
Deposit date:2018-12-06
Release date:2019-02-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:The Structure of an Archaeal B-Family DNA Polymerase in Complex with a Chemically Modified Nucleotide.
Angew.Chem.Int.Ed.Engl., 58, 2019
6BNI
DownloadVisualize
BU of 6bni by Molmil
Crystal Structure of Lysyl-tRNA Synthetase from Cryptosporidium parvum complexed with L-lysine and Adenosine
Descriptor: 1,2-ETHANEDIOL, ADENOSINE, LYSINE, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2017-11-16
Release date:2018-02-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of Lysyl-tRNA Synthetase from Cryptosporidium parvum complexed with L-lysine and Adenosine
to be published
6Q56
DownloadVisualize
BU of 6q56 by Molmil
Crystal structure of the B. subtilis M1A22 tRNA methyltransferase TrmK
Descriptor: NICKEL (II) ION, tRNA (adenine(22)-N(1))-methyltransferase
Authors:Degut, C, Roovers, M, Barraud, P, Brachet, F, Feller, A, Larue, V, Al Refaii, A, Caillet, J, Droogmans, L, Tisne, C.
Deposit date:2018-12-07
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of B. subtilis m1A22 tRNA methyltransferase TrmK: insights into tRNA recognition.
Nucleic Acids Res., 47, 2019
6HHO
DownloadVisualize
BU of 6hho by Molmil
Crystal structure of RIP1 kinase in complex with GSK547
Descriptor: 6-[4-[(5~{S})-5-[3,5-bis(fluoranyl)phenyl]pyrazolidin-1-yl]carbonylpiperidin-1-yl]pyrimidine-4-carbonitrile, Receptor-interacting serine/threonine-protein kinase 1
Authors:Thorpe, J.H, Harris, P.A.
Deposit date:2018-08-28
Release date:2018-12-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:RIP1 Kinase Drives Macrophage-Mediated Adaptive Immune Tolerance in Pancreatic Cancer.
Cancer Cell, 34, 2018

242500

PDB entries from 2025-10-01

PDB statisticsPDBj update infoContact PDBjnumon