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5J91
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Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ...
Authors:Cocozaki, A, Ferguson, A.
Deposit date:2016-04-08
Release date:2016-07-06
Last modified:2016-08-03
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.
Proc.Natl.Acad.Sci.USA, 113, 2016
7U0H
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BU of 7u0h by Molmil
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model
Descriptor: 25S rRNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, 5.8S rRNA, ...
Authors:Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P.
Deposit date:2022-02-18
Release date:2022-12-14
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Sequence-specific remodeling of a topologically complex RNP substrate by Spb4.
Nat.Struct.Mol.Biol., 29, 2022
3J45
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BU of 3j45 by Molmil
Structure of a non-translocating SecY protein channel with the 70S ribosome
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L23, 50S ribosomal protein L24, ...
Authors:Menetret, J.F, Park, E, Gumbart, J.C, Ludtke, S.J, Li, W, Whynot, A, Rapoport, T.A, Akey, C.W.
Deposit date:2013-06-18
Release date:2013-10-23
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
7XNY
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BU of 7xny by Molmil
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Cheng, J, Beckmann, R.
Deposit date:2022-04-30
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia.
Cancer Discov, 13, 2023
7XNX
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BU of 7xnx by Molmil
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Cheng, J, Beckmann, R.
Deposit date:2022-04-30
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia.
Cancer Discov, 13, 2023
6ZS9
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BU of 6zs9 by Molmil
Human mitochondrial ribosome in complex with ribosome recycling factor
Descriptor: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ...
Authors:Aibara, S, Singh, V, Modelska, A, Amunts, A.
Deposit date:2020-07-15
Release date:2020-10-14
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of mitochondrial translation.
Elife, 9, 2020
6UZ7
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BU of 6uz7 by Molmil
K.lactis 80S ribosome with p/PE tRNA and eIF5B
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ...
Authors:Fernandez, I.S, Huang, B.Y.
Deposit date:2019-11-14
Release date:2020-01-15
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Long-range interdomain communications in eIF5B regulate GTP hydrolysis and translation initiation.
Proc.Natl.Acad.Sci.USA, 117, 2020
1FCW
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BU of 1fcw by Molmil
TRNA POSITIONS DURING THE ELONGATION CYCLE
Descriptor: TRNAPHE
Authors:Agrawal, R.K, Spahn, C.M.T, Penczek, P, Grassucci, R.A, Nierhaus, K.H, Frank, J.
Deposit date:2000-07-19
Release date:2000-08-11
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle.
J.Cell Biol., 150, 2000
1HWP
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BU of 1hwp by Molmil
EBULIN COMPLEXED WITH PTEROIC ACID, TRIGONAL CRYSTAL FORM
Descriptor: EBULIN, PTEROIC ACID, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Pascal, J.M, Day, P.J, Monzingo, A.F, Ernst, S.R, Robertus, J.D.
Deposit date:2001-01-09
Release date:2001-01-24
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:2.8-A crystal structure of a nontoxic type-II ribosome-inactivating protein, ebulin l.
Proteins, 43, 2001
1HWM
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BU of 1hwm by Molmil
EBULIN,ORTHORHOMBIC CRYSTAL FORM MODEL
Descriptor: EBULIN, alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-galactopyranose
Authors:Pascal, J.M, Day, P.J, Monzingo, A.F, Ernst, S.R, Robertus, J.D.
Deposit date:2001-01-09
Release date:2001-01-24
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:2.8-A crystal structure of a nontoxic type-II ribosome-inactivating protein, ebulin l.
Proteins, 43, 2001
1HWN
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BU of 1hwn by Molmil
EBULIN COMPLEXED WITH GALACTOSE, TRIGONAL CRYSTAL FORM
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, EBULIN, beta-D-galactopyranose
Authors:Pascal, J.M, Day, P.J, Monzingo, A.F, Ernst, S.R, Robertus, J.D.
Deposit date:2001-01-09
Release date:2001-01-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:2.8-A crystal structure of a nontoxic type-II ribosome-inactivating protein, ebulin l.
Proteins, 43, 2001
7NAD
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BU of 7nad by Molmil
State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model
Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L17-A, ...
Authors:Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P.
Deposit date:2021-06-21
Release date:2022-11-09
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Sequence-specific remodeling of a topologically complex RNP substrate by Spb4.
Nat.Struct.Mol.Biol., 29, 2022
1HWO
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BU of 1hwo by Molmil
EBULIN COMPLEXED WITH LACTOSE, TRIGONAL CRYSTAL FORM
Descriptor: EBULIN, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Pascal, J.M, Day, P.J, Monzingo, A.F, Ernst, S.R, Robertus, J.D.
Deposit date:2001-01-09
Release date:2001-01-24
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:2.8-A crystal structure of a nontoxic type-II ribosome-inactivating protein, ebulin l.
Proteins, 43, 2001
7OJ0
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BU of 7oj0 by Molmil
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Su, T, Kudva, R, Becker, T, Berninghausen, O, Heijne, G, Cheng, J, Beckmann, R.
Deposit date:2021-05-13
Release date:2021-09-15
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of l-tryptophan-dependent inhibition of release factor 2 by the TnaC arrest peptide.
Nucleic Acids Res., 49, 2021
7PAU
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BU of 7pau by Molmil
free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Xue, L, Lenz, S, Rappsilber, J, Mahamid, J.
Deposit date:2021-07-30
Release date:2022-05-25
Last modified:2022-10-19
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Visualizing translation dynamics at atomic detail inside a bacterial cell.
Nature, 610, 2022
3OII
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BU of 3oii by Molmil
Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine
Descriptor: Essential for mitotic growth 1, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Thomas, S.R, Szyk, A, LaRonde-LeBlanc, N.
Deposit date:2010-08-19
Release date:2010-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis.
Nucleic Acids Res., 39, 2011
3OIJ
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BU of 3oij by Molmil
Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 2 molecules of cognate RNA
Descriptor: 5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*AP*CP*GP*CP*CP*C)-3', Essential for mitotic growth 1, MAGNESIUM ION, ...
Authors:Thomas, S.R, LaRonde-LeBlanc, N.
Deposit date:2010-08-19
Release date:2010-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis.
Nucleic Acids Res., 39, 2011
7WTL
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BU of 7wtl by Molmil
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D
Descriptor: 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ...
Authors:Cheng, J, La Venuta, G, Lau, B, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:In vitro structural maturation of an early stage pre-40S particle coupled with U3 snoRNA release and central pseudoknot formation.
Nucleic Acids Res., 50, 2022
7P2E
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BU of 7p2e by Molmil
Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin
Descriptor: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
Authors:Itoh, Y, Khawaja, A, Singh, V, Rorbach, J, Amunts, A.
Deposit date:2021-07-05
Release date:2022-07-27
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure of the mitoribosomal small subunit with streptomycin reveals Fe-S clusters and physiological molecules.
Elife, 11, 2022
8BHN
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BU of 8bhn by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BH4
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BU of 8bh4 by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-29
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BIM
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BU of 8bim by Molmil
Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-11-02
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.04 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BHJ
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BU of 8bhj by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BF7
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BU of 8bf7 by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-24
Release date:2023-08-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.33 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
7K5I
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BU of 7k5i by Molmil
SARS-COV-2 nsp1 in complex with human 40S ribosome
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Wang, L, Shi, M, Wu, H.
Deposit date:2020-09-16
Release date:2020-10-14
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism.
Biorxiv, 2020

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