7XNY
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
This is a non-PDB format compatible entry.
Summary for 7XNY
| Entry DOI | 10.2210/pdb7xny/pdb |
| EMDB information | 33330 |
| Descriptor | 28S rRNA, 60S ribosomal protein L7a, 60S ribosomal protein L9, ... (83 entities in total) |
| Functional Keywords | ribosome, rrna ribomethylome |
| Biological source | Homo sapiens (human) More |
| Total number of polymer chains | 79 |
| Total formula weight | 3792720.06 |
| Authors | Cheng, J.,Beckmann, R. (deposition date: 2022-04-30, release date: 2023-04-05, Last modification date: 2025-02-12) |
| Primary citation | Zhou, F.,Aroua, N.,Liu, Y.,Rohde, C.,Cheng, J.,Wirth, A.K.,Fijalkowska, D.,Gollner, S.,Lotze, M.,Yun, H.,Yu, X.,Pabst, C.,Sauer, T.,Oellerich, T.,Serve, H.,Rollig, C.,Bornhauser, M.,Thiede, C.,Baldus, C.,Frye, M.,Raffel, S.,Krijgsveld, J.,Jeremias, I.,Beckmann, R.,Trumpp, A.,Muller-Tidow, C. A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Cancer Discov, 13:332-347, 2023 Cited by PubMed Abstract: The development and regulation of malignant self-renewal remain unresolved issues. Here, we provide biochemical, genetic, and functional evidence that dynamics in ribosomal RNA (rRNA) 2'-O-methylation regulate leukemia stem cell (LSC) activity in vivo. A comprehensive analysis of the rRNA 2'-O-methylation landscape of 94 patients with acute myeloid leukemia (AML) revealed dynamic 2'-O-methylation specifically at exterior sites of ribosomes. The rRNA 2'-O-methylation pattern is closely associated with AML development stage and LSC gene expression signature. Forced expression of the 2'-O-methyltransferase fibrillarin (FBL) induced an AML stem cell phenotype and enabled engraftment of non-LSC leukemia cells in NSG mice. Enhanced 2'-O-methylation redirected the ribosome translation program toward amino acid transporter mRNAs enriched in optimal codons and subsequently increased intracellular amino acid levels. Methylation at the single site 18S-guanosine 1447 was instrumental for LSC activity. Collectively, our work demonstrates that dynamic 2'-O-methylation at specific sites on rRNAs shifts translational preferences and controls AML LSC self-renewal. PubMed: 36259929DOI: 10.1158/2159-8290.CD-22-0210 PDB entries with the same primary citation |
| Experimental method | ELECTRON MICROSCOPY (2.5 Å) |
Structure validation
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