PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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5DNY	Structure of the ATPrS-Mre11/Rad50-DNA complex Descriptor: DNA (27-MER), DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase, DNA double-strand break repair protein Mre11, ... Authors: Liu, Y. Deposit date: 2015-09-10 Release date: 2016-02-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.11 Å) Cite: ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex. Embo J., 35, 2016
6IID	Human EXOG-H140A in complex with RNA-DNA chimeric duplex Descriptor: DNA (5'-D(*CP*GP*TP*GP*AP*CP*AP*TP*CP*CP*CP*G)-3'), DNA/RNA (5'-R(P*CP*GP*GP*GP*A)-D(P*T)-R(P*G)-D(P*T)-R(P*CP*AP*CP*G)-3'), MAGNESIUM ION, ... Authors: Wu, C.C, Lin, J.L.J, Yuan, H.S. Deposit date: 2018-10-04 Release date: 2019-04-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.986 Å) Cite: A unique exonuclease ExoG cleaves between RNA and DNA in mitochondrial DNA replication. Nucleic Acids Res., 47, 2019
7YHP	CryoEM structure of Arabidopsis ROS1 in complex with 5mC-dsDNA at 3.1 Angstroms resolution Descriptor: DNA (40-MER), IRON/SULFUR CLUSTER, Sex-determining region Y protein,REPRESSOR OF SILENCING 1,DNA glycosylase/AP lyase ROS1 Authors: Du, X, Du, J. Deposit date: 2022-07-14 Release date: 2022-11-30 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Molecular basis of the plant ROS1-mediated active DNA demethylation. Nat.Plants, 9, 2023
5DNB	STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G Descriptor: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION Authors: Prive, G.G, Yanagi, K, Dickerson, R.E. Deposit date: 1990-03-22 Release date: 1991-10-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G. J.Mol.Biol., 217, 1991
7VRU	Crystal structure of PacII_M1M2S-DNA-SAH complex Descriptor: DNA (25-mer), S-ADENOSYL-L-HOMOCYSTEINE, Site-specific DNA recognition subunit, ... Authors: Zhu, J, Gao, P. Deposit date: 2021-10-25 Release date: 2022-11-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Molecular insights into DNA recognition and methylation by non-canonical type I restriction-modification systems. Nat Commun, 13, 2022
344D	DETERMINATION BY MAD-DM OF THE STRUCTURE OF THE DNA DUPLEX D(ACGTACG(5-BRU))2 AT 1.46A AND 100K Descriptor: DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*(BRU))-3') Authors: Todd, A.R, Adams, A, Powell, H.R, Cardin, C.J. Deposit date: 1997-08-04 Release date: 1997-09-26 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Determination by MAD-DM of the structure of the DNA duplex d[ACGTACG(5-BrU)]2 at 1.46 A and 100 K. Acta Crystallogr.,Sect.D, 55, 1999
4BNA	REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3') Authors: Kopka, M.L, Fratini, A.V, Dickerson, R.E. Deposit date: 1982-02-16 Release date: 1982-04-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. J.Biol.Chem., 257, 1982
3NM9	HMGD(M13A)-DNA complex Descriptor: DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3', High mobility group protein D Authors: Churchill, M.E.A, Klass, J, Zoetewey, D.L. Deposit date: 2010-06-22 Release date: 2010-09-22 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structural analysis of HMGD-DNA complexes reveals influence of intercalation on sequence selectivity and DNA bending. J.Mol.Biol., 403, 2010
309D	A DNA DECAMER WITH A STICKY END: THE CRYSTAL STRUCTURE OF D-CGACGATCGT Descriptor: DNA (5'-D(*CP*GP*AP*CP*GP*AP*TP*CP*GP*T)-3') Authors: Qiu, H.X, Dewan, J.C, Seeman, N.C. Deposit date: 1997-01-07 Release date: 1997-01-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A DNA decamer with a sticky end: the crystal structure of d-CGACGATCGT. J.Mol.Biol., 267, 1997
2ORE	Binary Structure of Escherichia coli DNA Adenine Methyltransferase and S-adenosylhomocysteine Descriptor: DNA adenine methylase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION Authors: Horton, J.R, Cheng, X. Deposit date: 2007-02-02 Release date: 2007-06-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Two Alternative Conformations of S-Adenosyl-L-homocysteine Bound to Escherichia coli DNA Adenine Methyltransferase and the Implication of Conformational Changes in Regulating the Catalytic Cycle. J.Biol.Chem., 282, 2007
2AE9	Solution Structure of the theta subunit of DNA polymerase III from E. coli Descriptor: DNA polymerase III, theta subunit Authors: Mueller, G.A, Kirby, T.W, Derose, E.F, Li, D, Schaaper, R.M, London, R.E. Deposit date: 2005-07-21 Release date: 2005-10-18 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Nuclear Magnetic Resonance Solution Structure of the Escherichia coli DNA Polymerase III {theta} Subunit. J.Bacteriol., 187, 2005
7W0V	C4'-SCF3-DT modifeid DNA-DNA duplex Descriptor: DNA (5'-D(*CP*CP*AP*TP*(DSW)P*AP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3') Authors: Li, Q, Trajkovski, M, Fan, C, Chen, J, Zhou, Y, Lu, K, Li, H, Su, X, Xi, Z, Plavec, J, Zhou, C. Deposit date: 2021-11-18 Release date: 2022-11-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: 4'-SCF 3 -Labeling Constitutes a Sensitive 19 F NMR Probe for Characterization of Interactions in the Minor Groove of DNA. Angew.Chem.Int.Ed.Engl., 61, 2022
8SJD	Cryo-EM structure of the Hermes transposase bound to two right-ends of its DNA transposon. Descriptor: DNA (46-MER), DNA (55-MER), DNA (8-MER), ... Authors: Lannes, L, Dyda, F. Deposit date: 2023-04-17 Release date: 2023-08-02 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (5.1 Å) Cite: Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding. Nat Commun, 14, 2023
5W2M	APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3F, ZINC ION Authors: Fang, Y, Xiao, X, Li, S.-X, Wolfe, A, Chen, X.S. Deposit date: 2017-06-06 Release date: 2017-12-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Molecular Interactions of a DNA Modifying Enzyme APOBEC3F Catalytic Domain with a Single-Stranded DNA. J. Mol. Biol., 430, 2018
1LQG	ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN Descriptor: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR Authors: Saikrishnan, K, Sagar, M.B, Ravishankar, R, Roy, S, Purnapatre, K, Handa, P, Varshney, U, Vijayan, M. Deposit date: 2002-05-10 Release date: 2002-11-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Domain closure and action of uracil DNA glycosylase (UDG): structures of new crystal forms containing the Escherichia coli enzyme and a comparative study of the known structures involving UDG. Acta Crystallogr.,Sect.D, 58, 2002
2Z6U	Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy Descriptor: DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), Modification methylase HhaI, ... Authors: Shieh, F.K. Deposit date: 2007-08-09 Release date: 2007-11-20 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.72 Å) Cite: AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI J.Mol.Biol., 373, 2007
4QEN	crystal structure of KRYPTONITE in complex with mCHH DNA and SAH Descriptor: DNA (5'-D(*AP*CP*TP*GP*AP*TP*GP*AP*GP*TP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*TP*(5CM)P*AP*TP*CP*AP*GP*TP*AP*T)-3'), Histone-lysine N-methyltransferase, ... Authors: Du, J, Li, S, Patel, D.J. Deposit date: 2014-05-17 Release date: 2014-07-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.002 Å) Cite: Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE. Mol.Cell, 55, 2014
4QEP	crystal structure of KRYPTONITE in complex with mCHG DNA and SAH Descriptor: DNA (5'-D(*AP*CP*TP*GP*CP*TP*GP*AP*GP*TP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*TP*(5CM)P*AP*GP*CP*AP*GP*TP*AP*T)-3'), Histone-lysine N-methyltransferase, ... Authors: Du, J, Li, S, Patel, D.J. Deposit date: 2014-05-17 Release date: 2014-07-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE. Mol.Cell, 55, 2014
1LQM	ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN Descriptor: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR Authors: Saikrishnan, K, Sagar, M.B, Ravishankar, R, Roy, S, Purnapatre, K, Varshney, U, Vijayan, M. Deposit date: 2002-05-10 Release date: 2002-11-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Domain closure and action of uracil DNA glycosylase (UDG): structures of new crystal forms containing the Escherichia coli enzyme and a comparative study of the known structures involving UDG. Acta Crystallogr.,Sect.D, 58, 2002
2LT7	Solution NMR structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA Descriptor: DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*GP*GP*CP*AP*GP*GP*AP*AP*GP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*CP*TP*TP*CP*CP*TP*GP*CP*CP*AP*AP*TP*AP*AP*CP*G)-3'), Transcriptional regulator Kaiso, ... Authors: Buck-Koehntop, B.A, Stanfield, R.L, Ekiert, D.C, Martinez-Yamout, M.A, Dyson, H, Wilson, I.A, Wright, P.E. Deposit date: 2012-05-15 Release date: 2012-09-05 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso. Proc.Natl.Acad.Sci.USA, 109, 2012
161D	A SINGLE 2'-HYDROXYL GROUP CONVERTS B-DNA TO A-DNA: CRYSTAL STRUCTURE OF THE DNA-RNA CHIMERIC DECAMER DUPLEX D(CCGGC)R(G)D(CCGG) WITH A NOVEL INTERMOLECULAR G.C BASE-PAIRED QUADRUPLET Descriptor: DNA/RNA (5'-D(*CP*CP*GP*GP*CP*)-R(*GP*)-D(*CP*CP*GP*G)-3') Authors: Ban, C, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1994-02-10 Release date: 1994-05-18 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet. J.Mol.Biol., 236, 1994
7VS4	Crystal structure of PacII_M1M2S-DNA(m6A)-SAH complex Descriptor: DNA (25-mer), S-ADENOSYL-L-HOMOCYSTEINE, Site-specific DNA recognition subunit, ... Authors: Zhu, J, Gao, P. Deposit date: 2021-10-25 Release date: 2022-11-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Molecular insights into DNA recognition and methylation by non-canonical type I restriction-modification systems. Nat Commun, 13, 2022
7XQ5	Crystal structure of ScIno2p-ScIno4p bound promoter DNA Descriptor: DNA (5'-D(*GP*AP*TP*TP*TP*TP*CP*AP*CP*AP*TP*GP*CP*AP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*GP*TP*GP*AP*AP*AP*AP*T)-3'), HEXANE-1,6-DIOL, ... Authors: Khan, M.H, Lu, X. Deposit date: 2022-05-06 Release date: 2022-07-20 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural Analysis of Ino2p/Ino4p Mutual Interactions and Their Binding Interface with Promoter DNA. Int J Mol Sci, 23, 2022
4QEO	crystal structure of KRYPTONITE in complex with mCHH DNA, H3(1-15) peptide and SAH Descriptor: DNA 5'-ACTGATGAGTACCAT-3', DNA 5'-GGTACT(5CM)ATCAGTAT-3', Histone H3, ... Authors: Du, J, Li, S, Patel, D.J. Deposit date: 2014-05-17 Release date: 2014-07-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE. Mol.Cell, 55, 2014
2AXD	solution structure of the theta subunit of escherichia coli DNA polymerase III in complex with the epsilon subunit Descriptor: DNA polymerase III, theta subunit Authors: Keniry, M.A, Park, A.Y, Owen, E.A, Hamdan, S.M, Pintacuda, G, Otting, G, Dixon, N.E. Deposit date: 2005-09-05 Release date: 2006-07-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of the theta subunit of Escherichia coli DNA polymerase III in complex with the epsilon subunit J.Bacteriol., 188, 2006

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