PDB: 5869 resultsInfo pagesStatus searchChemie searchBIRD

---

7BGN	Crystal structure of MtHISN2-AMP complex, a bifunctional enzyme from the histidine biosynthetic pathway Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... Authors: Witek, W, Ruszkowski, M. Deposit date: 2021-01-08 Release date: 2021-05-19 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plants. Sci Rep, 11, 2021
5KS7	Crystal structure of Listeria monocytogenes OpuCA CBS domain dimer in complex with cyclic-di-AMP Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Carnitine transport ATP-binding protein OpuCA Authors: Choi, P.H, Tong, L. Deposit date: 2016-07-07 Release date: 2016-07-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Cyclic di-AMP targets the cystathionine beta-synthase domain of the osmolyte transporter OpuC. Mol.Microbiol., 102, 2016
5LCD	Structure of Polyphosphate Kinase from Meiothermus ruber bound to AMP Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Gerhardt, S, Einsle, O, Kemper, F, Schwarzer, N. Deposit date: 2016-06-21 Release date: 2017-06-21 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5B6H	Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP. Descriptor: ADENOSINE MONOPHOSPHATE, Adenine phosphoribosyltransferase, CHLORIDE ION, ... Authors: Pavithra, G.C, Ramagopal, U.A. Deposit date: 2016-05-27 Release date: 2017-05-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP. To be published
4QSK	Crystal Structure of L. monocytogenes Pyruvate Carboxylase in complex with Cyclic-di-AMP Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, CITRATE ANION, MANGANESE (II) ION, ... Authors: Choi, P.H, Tong, L. Deposit date: 2014-07-04 Release date: 2014-10-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The Cyclic Dinucleotide c-di-AMP Is an Allosteric Regulator of Metabolic Enzyme Function. Cell(Cambridge,Mass.), 158, 2014
4QSH	Crystal Structure of L. monocytogenes Pyruvate Carboxylase in complex with Cyclic-di-AMP Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, CITRATE ANION, MANGANESE (II) ION, ... Authors: Choi, P.H, Tong, L. Deposit date: 2014-07-04 Release date: 2014-10-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.51 Å) Cite: The Cyclic Dinucleotide c-di-AMP Is an Allosteric Regulator of Metabolic Enzyme Function. Cell(Cambridge,Mass.), 158, 2014
6IV5	Crystal structure of arabidopsis N6-mAMP deaminase MAPDA Descriptor: Adenosine/AMP deaminase family protein, PHOSPHATE ION, ZINC ION Authors: Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J. Deposit date: 2018-12-02 Release date: 2019-02-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.749 Å) Cite: Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing. Rna Biol., 16, 2019
6J23	Crystal structure of arabidopsis ADAL complexed with GMP Descriptor: Adenosine/AMP deaminase family protein, GUANOSINE-5'-MONOPHOSPHATE, ZINC ION Authors: Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J. Deposit date: 2018-12-30 Release date: 2019-02-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing. Rna Biol., 16, 2019
6J4T	Crystal structure of arabidopsis ADAL complexed with IMP Descriptor: Adenosine/AMP deaminase family protein, INOSINIC ACID, ZINC ION Authors: Wu, B.X, Zhang, D, Nie, H.B, Shen, S.L, Li, S.S, Patel, D.J. Deposit date: 2019-01-10 Release date: 2019-07-31 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing. Rna Biol., 16, 2019
5GZ5	Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE MONOPHOSPHATE, ... Authors: Lin, C.C, Wu, B.S, Wu, W.G. Deposit date: 2016-09-26 Release date: 2017-09-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.093 Å) Cite: Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP To Be Published
4GS5	The crystal structure of acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein from Dyadobacter fermentans DSM 18053 Descriptor: 1,2-ETHANEDIOL, Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein, IODIDE ION Authors: Tan, K, Holowicki, J, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2012-08-27 Release date: 2012-09-12 Method: X-RAY DIFFRACTION (2.018 Å) Cite: The crystal structure of acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein from Dyadobacter fermentans DSM 18053 To be Published
7UTT	Structure of Non-hydrolyzable ATP (ApCpp) binds to Cyclic GMP AMP synthase (cGAS) through Mn coordination Descriptor: Cyclic GMP-AMP synthase, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MANGANESE (II) ION, ... Authors: Wu, S, Gabelli, S.B, Sohn, J. Deposit date: 2022-04-27 Release date: 2023-05-03 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structure of Non-hydrolyzable ATP (ApCpp) binds to Cyclic GMP AMP synthase (cGAS) through Mn coordination To Be Published
1FNC	REFINED CRYSTAL STRUCTURE OF SPINACH FERREDOXIN REDUCTASE AT 1.7 ANGSTROMS RESOLUTION: OXIDIZED, REDUCED, AND 2'-PHOSPHO-5'-AMP BOUND STATES Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, FERREDOXIN-NADP+ REDUCTASE, ... Authors: Bruns, C.M, Karplus, P.A. Deposit date: 1995-01-05 Release date: 1995-04-20 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Refined crystal structure of spinach ferredoxin reductase at 1.7 A resolution: oxidized, reduced and 2'-phospho-5'-AMP bound states. J.Mol.Biol., 247, 1995
1FNB	REFINED CRYSTAL STRUCTURE OF SPINACH FERREDOXIN REDUCTASE AT 1.7 ANGSTROMS RESOLUTION: OXIDIZED, REDUCED, AND 2'-PHOSPHO-5'-AMP BOUND STATES Descriptor: FERREDOXIN-NADP+ REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, ... Authors: Bruns, C.M, Karplus, P.A. Deposit date: 1995-01-05 Release date: 1995-04-20 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Refined crystal structure of spinach ferredoxin reductase at 1.7 A resolution: oxidized, reduced and 2'-phospho-5'-AMP bound states. J.Mol.Biol., 247, 1995
1FND	REFINED CRYSTAL STRUCTURE OF SPINACH FERREDOXIN REDUCTASE AT 1.7 ANGSTROMS RESOLUTION: OXIDIZED, REDUCED, AND 2'-PHOSPHO-5'-AMP BOUND STATES Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, FERREDOXIN-NADP+ REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Bruns, C.M, Karplus, P.A. Deposit date: 1995-01-05 Release date: 1995-04-20 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Refined crystal structure of spinach ferredoxin reductase at 1.7 A resolution: oxidized, reduced and 2'-phospho-5'-AMP bound states. J.Mol.Biol., 247, 1995
7JIJ	ATP-bound AMP-activated protein kinase Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-1, 5'-AMP-activated protein kinase subunit beta-2, 5'-AMP-activated protein kinase subunit gamma-1, ... Authors: Yan, Y, Zhou, X.E, Powell, K, Xu, T, Brunzelle, J.S, Xu, H.X, Melcher, K. Deposit date: 2020-07-23 Release date: 2021-07-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (5.5 Å) Cite: Structure of an AMPK complex in an inactive, ATP-bound state. Science, 373, 2021
4QLM	ydao riboswitch binding to c-di-AMP Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, RNA (108-MER), ... Authors: Ren, A.M, Patel, D.J. Deposit date: 2014-06-12 Release date: 2014-08-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.721 Å) Cite: c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets. Nat.Chem.Biol., 10, 2014
7U56	Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-03-01 Release date: 2022-03-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP to be published
7C9Q	Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with Mg2+ and AMP Descriptor: ADENOSINE MONOPHOSPHATE, Fructose-1,6-bisphosphatase 1, MAGNESIUM ION Authors: Huang, Y, Li, R, Wan, J. Deposit date: 2020-06-07 Release date: 2021-06-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.878 Å) Cite: Crystal structure of Human liver fructose-1,6-bisphoaphatase complex with Mg2+ and AMP To Be Published
3DDJ	Crystal structure of a cbs domain-containing protein in complex with amp (sso3205) from sulfolobus solfataricus at 1.80 A resolution Descriptor: ADENOSINE MONOPHOSPHATE, CBS domain-containing protein, DI(HYDROXYETHYL)ETHER Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-06-05 Release date: 2008-06-24 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of CBS domain-containing protein in complex with AMP (NP_344512.1) from SULFOLOBUS SOLFATARICUS at 1.80 A resolution To be published
1MD9	CRYSTAL STRUCTURE OF DhbE IN COMPLEX WITH DHB AND AMP Descriptor: 2,3-DIHYDROXY-BENZOIC ACID, 2,3-dihydroxybenzoate-AMP ligase, ADENOSINE MONOPHOSPHATE Authors: May, J.J, Kessler, N, Marahiel, M.A, Stubbs, M.T. Deposit date: 2002-08-07 Release date: 2002-09-11 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases. Proc.Natl.Acad.Sci.USA, 99, 2002
1RO9	CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH 8-Br-AMP Descriptor: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE, ZINC ION, cAMP-specific 3',5'-cyclic phosphodiesterase 4B Authors: Xu, R.X, Rocque, W.J, Lambert, M.H, Vanderwall, D.E, Nolte, R.T. Deposit date: 2003-12-01 Release date: 2004-12-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Crystal structures of the catalytic domain of phosphodiesterase 4B complexed with AMP, 8-Br-AMP, and rolipram. J.Mol.Biol., 337, 2004
6NT7	Cryo-EM structure of full-length chicken STING in the cGAMP-bound dimeric state Descriptor: Stimulator of interferon genes protein, cGAMP Authors: Shang, G, Zhang, C, Chen, Z.J, Bai, X, Zhang, X. Deposit date: 2019-01-28 Release date: 2019-03-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4 Å) Cite: Cryo-EM structures of STING reveal its mechanism of activation by cyclic GMP-AMP. Nature, 567, 2019
6NT8	Cryo-EM structure of full-length chicken STING in the cGAMP-bound tetrameric state Descriptor: Stimulator of interferon genes protein, cGAMP Authors: Shang, G, Zhang, C, Chen, Z.J, Bai, X, Zhang, X. Deposit date: 2019-01-28 Release date: 2019-03-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Cryo-EM structures of STING reveal its mechanism of activation by cyclic GMP-AMP. Nature, 567, 2019
6AC9	Crystal structure of human Vaccinia-related kinase 1 (VRK1) in complex with AMP-PNP Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ... Authors: Ngow, Y.S, Sreekanth, R, Yoon, H.S. Deposit date: 2018-07-25 Release date: 2018-12-26 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Crystal structure of human vaccinia-related kinase 1 in complex with AMP-PNP, a non-hydrolyzable ATP analog. Protein Sci., 28, 2019

<12345678910111213141516>