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3FR0
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BU of 3fr0 by Molmil
Human glucokinase in complex with 2-amino benzamide activator
Descriptor: 2-amino-N-(4-methyl-1,3-thiazol-2-yl)-5-[(4-methyl-4H-1,2,4-triazol-3-yl)sulfanyl]benzamide, Glucokinase, SODIUM ION, ...
Authors:Kamata, K.
Deposit date:2009-01-08
Release date:2009-02-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Identification of novel and potent 2-amino benzamide derivatives as allosteric glucokinase activators
Bioorg.Med.Chem.Lett., 19, 2009
3FUU
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BU of 3fuu by Molmil
T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with Adenosine in space group P212121
Descriptor: ADENOSINE, Dimethyladenosine transferase
Authors:Demirci, H, Belardinelli, R, Seri, E, Gregory, S.T, Gualerzi, C, Dahlberg, A.E, Jogl, G.
Deposit date:2009-01-14
Release date:2009-03-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural rearrangements in the active site of the Thermus thermophilus 16S rRNA methyltransferase KsgA in a binary complex with 5'-methylthioadenosine.
J.Mol.Biol., 388, 2009
3FV9
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BU of 3fv9 by Molmil
Crystal structure of putative mandelate racemase/muconatelactonizing enzyme from ROSEOVARIUS NUBINHIBENS ISM complexed with magnesium
Descriptor: MAGNESIUM ION, Mandelate racemase/muconate lactonizing enzyme
Authors:Malashkevich, V.N, Rutter, M, Bain, K.T, Lau, C, Ozyurt, S, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-01-15
Release date:2009-01-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of putative mandelate racemase/muconatelactonizing enzyme from ROSEOVARIUS NUBINHIBENS ISM complexed with magnesium
to be published
3FXQ
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BU of 3fxq by Molmil
Crystal structure of the LysR-type transcriptional regulator TsaR
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, FORMIC ACID, ...
Authors:Monferrer, D, Tralau, T, Kertesz, M.A, Kikhney, A, Svergun, D, Uson, I.
Deposit date:2009-01-21
Release date:2010-01-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural studies on the full-length LysR-type regulator TsaR from Comamonas testosteroni T-2 reveal a novel open conformation of the tetrameric LTTR fold
Mol.Microbiol., 75, 2010
3FYI
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BU of 3fyi by Molmil
Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides in the reduced state bound with cyanide
Descriptor: CADMIUM ION, CALCIUM ION, COPPER (I) ION, ...
Authors:Qin, L, Mills, D.A, Proshlyakov, D.A, Hiser, C, Ferguson-Miller, S.
Deposit date:2009-01-22
Release date:2009-06-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Redox dependent conformational changes in cytochrome c oxidase suggest a gating mechanism for proton uptake.
Biochemistry, 48, 2009
3FTG
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BU of 3ftg by Molmil
Crystal Structure of H2Db in complex with NP366-N3A variant peptide from influenza
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, D-B alpha chain, ...
Authors:Gras, S, Guillonneau, C, Rossjohn, J.
Deposit date:2009-01-12
Release date:2009-12-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Protective efficacy of cross-reactive CD8+ T cells recognising mutant viral epitopes depends on peptide-MHC-I structural interactions and T cell activation threshold.
Plos Pathog., 6, 2010
3FQG
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BU of 3fqg by Molmil
Crystal Structure of the S. pombe Rai1
Descriptor: MAGNESIUM ION, Protein din1
Authors:Xiang, S, Tong, L.
Deposit date:2009-01-07
Release date:2009-02-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of the 5'-->3' exoribonuclease Rat1 and its activating partner Rai1.
Nature, 458, 2009
3FQV
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BU of 3fqv by Molmil
Staphylococcus aureus F98Y mutant dihydrofolate reductase complexed with NADPH and 2,4-diamino-5-[3-(3-methoxy-4-phenylphenyl)but-1-ynyl]-6-methylpyrimidine
Descriptor: 5-[(3S)-3-(2-methoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Trimethoprim-sensitive dihydrofolate reductase
Authors:Anderson, A.C, Frey, K.M, Liu, J, Lombardo, M.N.
Deposit date:2009-01-07
Release date:2009-03-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of wild-type and mutant methicillin-resistant Staphylococcus aureus dihydrofolate reductase reveal an alternate conformation of NADPH that may be linked to trimethoprim resistance.
J.Mol.Biol., 387, 2009
3FSR
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BU of 3fsr by Molmil
Chimera of alcohol dehydrogenase by exchange of the cofactor binding domain res 153-295 of T. brockii ADH by C. beijerinckii ADH
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, NADP-dependent alcohol dehydrogenase, ...
Authors:Frolow, F, Greenblatt, H, Goihberg, E, Burstein, Y.
Deposit date:2009-01-11
Release date:2010-01-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biochemical and structural properties of chimeras constructed by exchange of cofactor-binding domains in alcohol dehydrogenases from thermophilic and mesophilic microorganisms
Biochemistry, 49, 2010
3FUX
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BU of 3fux by Molmil
T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with 5'-methylthioadenosine in space group P212121
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, Dimethyladenosine transferase
Authors:Demirci, H, Belardinelli, R, Seri, E, Gregory, S.T, Gualerzi, C, Dahlberg, A.E, Jogl, G.
Deposit date:2009-01-14
Release date:2009-03-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural rearrangements in the active site of the Thermus thermophilus 16S rRNA methyltransferase KsgA in a binary complex with 5'-methylthioadenosine.
J.Mol.Biol., 388, 2009
3FW7
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BU of 3fw7 by Molmil
Structure of berberine bridge enzyme, H104A variant
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
Authors:Winkler, A, Macheroux, P, Gruber, K.
Deposit date:2009-01-17
Release date:2009-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.825 Å)
Cite:Structural roles of biocovalent flaninylation in berberine bridge enzyme
to be published
3FXH
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BU of 3fxh by Molmil
Crystal structure from the mobile metagenome of Halifax Harbour Sewage Outfall: Integron Cassette Protein HFX_CASS2
Descriptor: Integron gene cassette protein HFX_CASS2
Authors:Sureshan, V, Deshpande, C, Harrop, S.J, Kudritska, M, Koenig, J.E, Evdokimova, E, Chang, C, Edwards, A.M, Savchenko, A, Joachimiak, A, Doolittle, W.F, Stokes, H.W, Curmi, P.M.G, Mabbutt, B.C, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-01-20
Release date:2009-02-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.837 Å)
Cite:Integron gene cassettes: a repository of novel protein folds with distinct interaction sites.
Plos One, 8, 2013
3FWA
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BU of 3fwa by Molmil
Structure of berberine bridge enzyme, C166A variant in complex with (S)-reticuline
Descriptor: (S)-reticuline, 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Winkler, A, Macheroux, P, Gruber, K.
Deposit date:2009-01-17
Release date:2009-05-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.496 Å)
Cite:Structural roles of biocovalent flaninylation in berberine bridge enzyme
to be published
3FXR
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BU of 3fxr by Molmil
Crystal structure of TsaR in complex with sulfate
Descriptor: ASCORBIC ACID, GLYCEROL, LysR type regulator of tsaMBCD, ...
Authors:Monferrer, D, Tralau, T, Kertesz, M.A, Kikhney, A, Svergun, D, Uson, I.
Deposit date:2009-01-21
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural studies on the full-length LysR-type regulator TsaR from Comamonas testosteroni T-2 reveal a novel open conformation of the tetrameric LTTR fold
Mol.Microbiol., 75, 2010
3FS1
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BU of 3fs1 by Molmil
Crystal structure of HNF4a LBD in complex with the ligand and the coactivator PGC-1a fragment
Descriptor: Hepatocyte nuclear factor 4-alpha, MYRISTIC ACID, PPARgamma Coactivator-1a (PGC-1a)
Authors:Rha, G, Wu, G, Chi, Y.
Deposit date:2009-01-08
Release date:2009-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Multiple binding modes between HNF4alpha and the LXXLL motifs of PGC-1alpha lead to full activation
J.Biol.Chem., 284, 2009
3FWV
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BU of 3fwv by Molmil
Crystal Structure of a Redesigned TPR Protein, T-MOD(VMY), in Complex with MEEVF Peptide
Descriptor: Heat shock protein HSP 90-beta, Hsc70/Hsp90-organizing protein, NICKEL (II) ION
Authors:Jackrel, M.E, Valverde, R, Regan, L.
Deposit date:2009-01-19
Release date:2009-04-21
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Redesign of a protein-peptide interaction: characterization and applications
Protein Sci., 18, 2009
3FTR
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BU of 3ftr by Molmil
Structure of an amyloid forming peptide SSTNVG from IAPP (alternate polymorph)
Descriptor: SSTNVG FROM ISLET AMYLOID POLYPEPTIDE
Authors:Landau, M, Eisenberg, D.
Deposit date:2009-01-13
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Molecular mechanisms for protein-encoded inheritance.
Nat.Struct.Mol.Biol., 16, 2009
3FY2
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BU of 3fy2 by Molmil
Human EphA3 Kinase and Juxtamembrane Region Bound to Substrate KQWDNYEFIW
Descriptor: Ephrin type-A receptor 3, peptide substrate
Authors:Davis, T, Walker, J.R, Mackenzie, F, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2009-01-21
Release date:2009-02-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural recognition of an optimized substrate for the ephrin family of receptor tyrosine kinases.
Febs J., 276, 2009
3FQJ
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BU of 3fqj by Molmil
Crystal Structure of the Mouse Dom3Z in Complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein Dom3Z
Authors:Xiang, S, Tong, L.
Deposit date:2009-01-07
Release date:2009-02-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.623 Å)
Cite:Structure and function of the 5'-->3' exoribonuclease Rat1 and its activating partner Rai1.
Nature, 458, 2009
3FUB
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BU of 3fub by Molmil
Crystal structure of GDNF-GFRalpha1 complex
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Parkash, V, Goldman, A.
Deposit date:2009-01-14
Release date:2009-06-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Comparison of GFL-GFRalpha complexes: further evidence relating GFL bend angle to RET signalling
Acta Crystallogr.,Sect.F, 65, 2009
3GGS
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BU of 3ggs by Molmil
Human purine nucleoside phosphorylase double mutant E201Q,N243D complexed with 2-fluoro-2'-deoxyadenosine
Descriptor: 5-(6-AMINO-2-FLUORO-PURIN-9-YL)-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-OL, Purine nucleoside phosphorylase, SULFATE ION
Authors:Sawaya, M.R, Afshar, S.
Deposit date:2009-03-02
Release date:2009-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structure of a mutant human purine nucleoside phosphorylase with the prodrug, 2-fluoro-2'-deoxyadenosine and the cytotoxic drug, 2-fluoroadenine.
Protein Sci., 18, 2009
3FYP
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BU of 3fyp by Molmil
Crystal structure of the quadruple mutant (N23C/C246S/D247E/P249A) of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis
Descriptor: 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase, CHLORIDE ION, GLYCEROL, ...
Authors:Jameson, G.B, Parker, E.J, Cochrane, F.P, Patchett, M.L.
Deposit date:2009-01-22
Release date:2009-03-31
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Reversing evolution: re-establishing obligate metal ion dependence in a metal-independent KDO8P synthase
J.Mol.Biol., 390, 2009
3GIB
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BU of 3gib by Molmil
Crystal Structure of the Complex of the E. coli Hfq with Poly(A)
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3', Protein hfq
Authors:Link, T.M, Valentin-Hansen, P, Brennan, R.G.
Deposit date:2009-03-05
Release date:2009-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
Proc.Natl.Acad.Sci.USA, 106, 2009
3G30
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BU of 3g30 by Molmil
CTX-M-9 class A beta-lactamase complexed with compound 3 (G30)
Descriptor: (1S,2R)-2-[(2,5-difluorophenyl)carbamoyl]cyclopropanecarboxylic acid, Beta-lactamase CTX-M-9a
Authors:Chen, Y, Shoichet, B.K.
Deposit date:2009-02-01
Release date:2009-03-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular docking and ligand specificity in fragment-based inhibitor discovery
Nat.Chem.Biol., 5, 2009
3G3Y
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BU of 3g3y by Molmil
Mth0212 in complex with ssDNA in space group P32
Descriptor: 5'-D(*CP*GP*TP*AP*(UPS)P*TP*AP*CP*G)-3', Exodeoxyribonuclease, GLYCEROL, ...
Authors:Lakomek, K, Dickmanns, A, Ficner, R.
Deposit date:2009-02-03
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
J.Mol.Biol., 399, 2010

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