Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6JWU
DownloadVisualize
BU of 6jwu by Molmil
Crystal structure of Plasmodium falciparum HPPK-DHPS wild type with STZ-DHP
Descriptor: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 4-{[(2-amino-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}-N-(1,3-thiazol-2-yl)benzenesulfonamide, 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase-dihydropteroate synthase, ...
Authors:Chitnumsub, P, Jaruwat, A, Yuthavong, Y.
Deposit date:2019-04-21
Release date:2020-02-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The structure of Plasmodium falciparum hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase reveals the basis of sulfa resistance.
Febs J., 287, 2020
5VOS
DownloadVisualize
BU of 5vos by Molmil
VGSNKGAIIGL from Amyloid Beta determined by MicroED
Descriptor: Amyloid beta A4 protein
Authors:Rodriguez, J.A, Sawaya, M.R, Cascio, D, Eisenberg, D.S, Griner, S.L, Gonen, T.
Deposit date:2017-05-03
Release date:2018-01-03
Last modified:2024-03-13
Method:ELECTRON CRYSTALLOGRAPHY (1.42 Å)
Cite:Common fibrillar spines of amyloid-beta and human islet amyloid polypeptide revealed by microelectron diffraction and structure-based inhibitors.
J. Biol. Chem., 293, 2018
5ODL
DownloadVisualize
BU of 5odl by Molmil
Single-stranded DNA-binding protein from bacteriophage Enc34 in complex with ssDNA
Descriptor: GLYCEROL, SODIUM ION, oligo(T), ...
Authors:Cernooka, E, Rumnieks, J, Kazaks, A, Tars, K.
Deposit date:2017-07-05
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34.
Sci Rep, 7, 2017
5L23
DownloadVisualize
BU of 5l23 by Molmil
Crystal structure of the complex between the N-terminal SH3 domain of CrkII and a proline-rich ligand
Descriptor: Adapter molecule crk, C3G derived peptide, DI(HYDROXYETHYL)ETHER
Authors:Bhatt, V.S, Krieger, I, Sacchettini, J, Cho, J.-H.
Deposit date:2016-07-30
Release date:2016-09-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of the complex between the N-terminal SH3 domain of CrkII and a proline-rich ligand
To Be Published
5NTG
DownloadVisualize
BU of 5ntg by Molmil
Structure of Leucyl aminopeptidase from Trypanosoma cruzi in complex with citrate
Descriptor: Aminopeptidase, CITRIC ACID, MANGANESE (II) ION, ...
Authors:Timm, J, Wilson, K.
Deposit date:2017-04-27
Release date:2017-08-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structural Characterization of Acidic M17 Leucine Aminopeptidases from the TriTryps and Evaluation of Their Role in Nutrient Starvation inTrypanosoma brucei.
mSphere, 2, 2017
5L62
DownloadVisualize
BU of 5l62 by Molmil
Yeast 20S proteasome with human beta5c (1-138) and human beta6 (97-111; 118-133) in complex with epoxyketone inhibitor 16
Descriptor: (2~{S})-3-(1~{H}-indol-3-yl)-~{N}-[(2~{S},3~{S},4~{R})-4-methyl-3,5-bis(oxidanyl)-1-phenyl-pentan-2-yl]-2-[[(2~{R})-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]propanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Groll, M, Huber, E.M.
Deposit date:2016-05-28
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
5VJ9
DownloadVisualize
BU of 5vj9 by Molmil
Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa
Descriptor: GUANIDINE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Reiss, C.W, Strobel, S.A.
Deposit date:2017-04-19
Release date:2017-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural basis for ligand binding to the guanidine-II riboswitch.
RNA, 23, 2017
2WBF
DownloadVisualize
BU of 2wbf by Molmil
Crystal Structure Analysis of SERA5E from plasmodium falciparum with loop 690-700 ordered
Descriptor: CALCIUM ION, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Smith, B.J, Malby, R.L, Colman, P.M, Clarke, O.B.
Deposit date:2009-02-27
Release date:2009-03-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into the protease-like antigen Plasmodium falciparum SERA5 and its noncanonical active-site serine.
J. Mol. Biol., 392, 2009
5O5U
DownloadVisualize
BU of 5o5u by Molmil
X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with a urea based inhibitor PSMA 1027
Descriptor: (2~{S})-2-[[(2~{S})-6-[[(2~{S})-2-[[4-[[[(2~{S})-2-[[(2~{R})-2-[(6-fluoranylpyridin-3-yl)carbonylamino]-3-sulfo-propanoyl]amino]-3-sulfo-propanoyl]amino]methyl]phenyl]carbonylamino]-3-naphthalen-2-yl-propanoyl]amino]-1-oxidanyl-1-oxidanylidene-hexan-2-yl]carbamoylamino]pentanedioic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Novakova, Z, Barinka, C, Motlova, L.
Deposit date:2017-06-02
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with a urea based inhibitor PSMA 1027
To Be Published
5VR6
DownloadVisualize
BU of 5vr6 by Molmil
Structure of Human Sts-1 histidine phosphatase domain with sulfate bound
Descriptor: SULFATE ION, Ubiquitin-associated and SH3 domain-containing protein B
Authors:Zhou, W, Yin, Y, Weinheimer, A.W, Kaur, N, Carpino, N, French, J.B.
Deposit date:2017-05-10
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural and Functional Characterization of the Histidine Phosphatase Domains of Human Sts-1 and Sts-2.
Biochemistry, 56, 2017
5O6A
DownloadVisualize
BU of 5o6a by Molmil
The cryo-EM structure of Tick-borne encephalitis virus mature particle
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein, Small envelope protein M
Authors:Fuzik, T, Plevka, P.
Deposit date:2017-06-06
Release date:2018-02-07
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of tick-borne encephalitis virus and its neutralization by a monoclonal antibody.
Nat Commun, 9, 2018
5VAJ
DownloadVisualize
BU of 5vaj by Molmil
BhRNase H - amide-RNA/DNA complex
Descriptor: ACETATE ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), GLYCEROL, ...
Authors:Pallan, P.S, Egli, M.
Deposit date:2017-03-27
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.
Nucleic Acids Res., 45, 2017
5NY1
DownloadVisualize
BU of 5ny1 by Molmil
Carbonic Anhydrase II Inhibitor RA10
Descriptor: 3,6,7-trimethyl-~{N}-[(4-sulfamoylphenyl)methyl]-1-benzofuran-2-carboxamide, Carbonic anhydrase 2, ZINC ION
Authors:Brynda, J, Rezacova, P, Horejsi, M, Fanfrlik, J.
Deposit date:2017-05-11
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Ranking Power of the SQM/COSMO Scoring Function on Carbonic Anhydrase II-Inhibitor Complexes.
Chemphyschem, 19, 2018
5L9K
DownloadVisualize
BU of 5l9k by Molmil
OCEANOBACILLUS IHEYENSIS MACRODOMAIN WITH ADPR
Descriptor: GLYCEROL, MACROD-TYPE MACRODOMAIN, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Gil-Ortiz, F, Zapata-Perez, R, Martinez, A.B, Juanhuix, J, Sanchez-Ferrer, A.
Deposit date:2016-06-10
Release date:2017-05-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and functional analysis of Oceanobacillus iheyensis macrodomain reveals a network of waters involved in substrate binding and catalysis.
Open Biol, 7, 2017
1FVF
DownloadVisualize
BU of 1fvf by Molmil
CRYSTAL STRUCTURE ANALYSIS OF NEURONAL SEC1 FROM THE SQUID L. PEALEI
Descriptor: SEC1
Authors:Bracher, A, Weissenhorn, W.
Deposit date:2000-09-19
Release date:2001-01-31
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of neuronal squid Sec1 implicate inter-domain hinge movement in the release of t-SNAREs.
J.Mol.Biol., 306, 2001
5L9Z
DownloadVisualize
BU of 5l9z by Molmil
Crystal structure of human heparanase nucleophile mutant (E343Q), in complex with unreacted glucuronic acid configured aziridine probe JJB355
Descriptor: (1~{R},2~{S},3~{R},4~{S},5~{S},6~{R})-7-[8-[(azanylidene-{4}-azanylidene)amino]octyl]-3,4,5-tris(oxidanyl)-7-azabicyclo[4.1.0]heptane-2-carboxylic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wu, L, Jin, Y, Davies, G.J.
Deposit date:2016-06-13
Release date:2017-05-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Activity-based probes for functional interrogation of retaining beta-glucuronidases.
Nat. Chem. Biol., 13, 2017
5NZ4
DownloadVisualize
BU of 5nz4 by Molmil
Complex of I223V mutant variant of neuraminidase from H1N1 influenza virus with oseltamivir
Descriptor: (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Pachl, P, Pokorna, J, Karlukova, E.
Deposit date:2017-05-12
Release date:2018-07-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Kinetic, Thermodynamic, and Structural Analysis of Drug Resistance Mutations in Neuraminidase from the 2009 Pandemic Influenza Virus.
Viruses, 10, 2018
5NZW
DownloadVisualize
BU of 5nzw by Molmil
Crystal structure of DNA cross-link repair protein 1A in complex with ceftriaxone
Descriptor: Ceftriaxone, DNA cross-link repair 1A protein, NICKEL (II) ION
Authors:Newman, J.A, Aitkenhead, H, Kupinska, K, Burgess-Brown, N.A, Talon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O.
Deposit date:2017-05-15
Release date:2017-06-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of DNA cross-link repair protein 1A in complex with ceftriaxone
To Be Published
5UJK
DownloadVisualize
BU of 5ujk by Molmil
Malate dehydrogenase from Methylobacterium extorquens, complexed with NAD
Descriptor: CALCIUM ION, CHLORIDE ION, Malate dehydrogenase, ...
Authors:Gonzalez, J.M.
Deposit date:2017-01-18
Release date:2017-02-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Conformational changes on substrate binding revealed by structures of Methylobacterium extorquens malate dehydrogenase.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5L5Y
DownloadVisualize
BU of 5l5y by Molmil
Yeast 20S proteasome with human beta5c (1-138) and human beta6 (97-111; 118-133) in complex with carfilzomib
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Groll, M, Huber, E.M.
Deposit date:2016-05-28
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
1FZR
DownloadVisualize
BU of 1fzr by Molmil
CRYSTAL STRUCTURE OF BACTERIOPHAGE T7 ENDONUCLEASE I
Descriptor: ENDONUCLEASE I
Authors:Hadden, J.M, Convery, M.A, Declais, A.C, Lilley, D.M.J, Phillips, S.E.V.
Deposit date:2000-10-04
Release date:2001-01-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I.
Nat.Struct.Biol., 8, 2001
6JVV
DownloadVisualize
BU of 6jvv by Molmil
Crystal structure of maleylpyruvate hydrolase from Sphingobium.sp SYK-6
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, SULFATE ION, ...
Authors:Hong, H, Kim, K.-J.
Deposit date:2019-04-17
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structural insights into a maleylpyruvate hydrolase from sphingobium sp. SYK-6, a bacterium degrading lignin-derived aryls.
Biochem.Biophys.Res.Commun., 514, 2019
5UW0
DownloadVisualize
BU of 5uw0 by Molmil
Activated state yGsy2p in complex with UDP-2-fluoro-2-deoxy-glucose
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Glycogen [starch] synthase isoform 2, URIDINE-5'-DIPHOSPHATE, ...
Authors:Mahalingan, K.K, Hurley, T.D.
Deposit date:2017-02-20
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Activated state yGsy2p in complex with UDP-2-fluoro-2-deoxy-glucose
To Be Published
5NYR
DownloadVisualize
BU of 5nyr by Molmil
Anbu from Hyphomicrobium sp. strain MC1 -SG: R3
Descriptor: Anbu, SULFATE ION
Authors:Vielberg, M.-T, Groll, M.
Deposit date:2017-05-11
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:On the Trails of the Proteasome Fold: Structural and Functional Analysis of the Ancestral beta-Subunit Protein Anbu.
J. Mol. Biol., 430, 2018
5L3O
DownloadVisualize
BU of 5l3o by Molmil
Crystal Structure of Human Carbonic Anhydrase II in Complex with a Quinoline Oligoamide Foldamer
Descriptor: Aromatic foldamer, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Jewginski, M, Langlois d'Estaintot, B, Granier, T, Huc, Y.
Deposit date:2016-05-24
Release date:2017-03-01
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Self-Assembled Protein-Aromatic Foldamer Complexes with 2:3 and 2:2:1 Stoichiometries.
J. Am. Chem. Soc., 139, 2017

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon