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6JCY	Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF sigma factor sigH/E Descriptor: DNA (5'-D(*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*GP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Li, L, Zhang, Y. Deposit date: 2019-01-30 Release date: 2019-05-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.106 Å) Cite: Structures and mechanism of transcription initiation by bacterial ECF factors. Nucleic Acids Res., 47, 2019
7MEI	Composite structure of EC+EC Descriptor: DNA (74-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Murakami, K. Deposit date: 2021-04-06 Release date: 2022-03-02 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7MK9	Complex structure of trailing EC of EC+EC (trailing EC-focused) Descriptor: DNA (40-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Murakami, K. Deposit date: 2021-04-22 Release date: 2022-04-27 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
8G1S	Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand Descriptor: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. Deposit date: 2023-02-02 Release date: 2023-06-21 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
8OEU	Structure of the mammalian Pol II-SPT6 complex (composite structure, Structure 4) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. Deposit date: 2023-03-13 Release date: 2023-10-18 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8OEW	Structure of the mammalian Pol II-Elongin complex, lacking the ELOA latch (composite structure, structure 2) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. Deposit date: 2023-03-13 Release date: 2023-10-18 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8OF0	Structure of the mammalian Pol II-SPT6-Elongin complex, Structure 1 Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. Deposit date: 2023-03-13 Release date: 2023-10-18 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8OEV	Structure of the mammalian Pol II-SPT6-Elongin complex, lacking ELOA latch (composite structure, structure 3) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... Authors: Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. Deposit date: 2023-03-13 Release date: 2023-10-18 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8P4B	Structural insights into human co-transcriptional capping - structure 2 Descriptor: DNA (35-MER), DNA (5'-D(P*AP*GP*CP*GP*GP*CP*GP*GP*AP*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*AP*GP*CP*TP*G)-3'), DNA-directed RNA polymerase II subunit E, ... Authors: Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. Deposit date: 2023-05-20 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
8P4A	Structural insights into human co-transcriptional capping - structure 1 Descriptor: DNA (29-MER), DNA (38-MER), DNA-directed RNA polymerase II subunit E, ... Authors: Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P. Deposit date: 2023-05-20 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural insights into human co-transcriptional capping. Mol.Cell, 83, 2023
3FKI	12-Subunit RNA Polymerase II Refined with Zn-SAD data Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Meyer, P.A, Ye, P, Suh, M.H, Zhang, M, Fu, J. Deposit date: 2008-12-16 Release date: 2009-03-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.88 Å) Cite: Structure of the 12-Subunit RNA Polymerase II Refined with the Aid of Anomalous Diffraction Data J.Biol.Chem., 284, 2009
8S54	RNA polymerase II early elongation complex bound to TFIIE and TFIIF - state b (composite structure) Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Zhan, Y, Grabber, F, Oberbeckmann, E, Dienemann, C, Cramer, P. Deposit date: 2024-02-22 Release date: 2024-04-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Three-step mechanism of promoter escape by RNA polymerase II. Mol.Cell, 84, 2024
6ZTE	Structure of a parallel c-myc modified with 5' duplex stem-loop and 3' diagonal snap-back loop Descriptor: DNA (36-MER) Authors: Vianney, Y.M, Weisz, K. Deposit date: 2020-07-20 Release date: 2020-10-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands. Chemistry, 26, 2020
7MKA	Structure of EC+EC (leading EC-focused) Descriptor: DNA (40-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Murakami, K. Deposit date: 2021-04-22 Release date: 2022-04-27 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
8WA1	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2 Descriptor: DNA (24-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
8WA0	The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1 Descriptor: DNA (48-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
5O8K	Crystal structure of mammalian Rev7 in complex with Rev3 1875-1895 Descriptor: DNA polymerase zeta catalytic subunit, Mitotic spindle assembly checkpoint protein MAD2B Authors: Emamzadah, S, Tropia, L, Huber, F, Halazonetis, T. Deposit date: 2017-06-13 Release date: 2018-06-27 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of mammalian Rev7 in complex with Rev3 1875-1895 To Be Published
8G2W	Cryo-EM structure of 3DVA component 2 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand Descriptor: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. Deposit date: 2023-02-06 Release date: 2023-06-21 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
8W9Z	The cryo-EM structure of the Nicotiana tabacum PEP-PAP Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta'', ... Authors: Wu, X.X, Zhang, Y. Deposit date: 2023-09-06 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structures of the plant plastid-encoded RNA polymerase. Cell, 187, 2024
4QJV	The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION Authors: Hirata, A, Murakami, K.S. Deposit date: 2014-06-05 Release date: 2014-10-08 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.601 Å) Cite: The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration Nat Commun, 5, 2014
5U5Q	12 Subunit RNA Polymerase II at Room Temperature collected using SFX Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Bushnell, D.A, Oberthur, D, Mariani, V, Yefanov, O, Tolstikova, A, Barty, A. Deposit date: 2016-12-07 Release date: 2017-03-29 Last modified: 2019-11-27 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Double-flow focused liquid injector for efficient serial femtosecond crystallography. Sci Rep, 7, 2017
2CW0	Crystal structure of Thermus thermophilus RNA polymerase holoenzyme at 3.3 angstroms resolution Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ... Authors: Tuske, S, Sarafianos, S.G, Wang, X, Hudson, B, Sineva, E, Mukhopadhyay, J, Birktoft, J.J, Leroy, O, Ismail, S, Clark Jr, A.D, Dharia, C, Napoli, A, Laptenko, O, Lee, J, Borukhov, S, Ebright, R.H, Arnold, E. Deposit date: 2005-06-15 Release date: 2005-09-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation Cell(Cambridge,Mass.), 122, 2005
8TNP	Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40 Descriptor: DNA damage-binding protein 1, Maltose/maltodextrin-binding periplasmic protein,SD40, Protein cereblon, ... Authors: Roy Burman, S.S, Hunkeler, M, Fischer, E.S. Deposit date: 2023-08-02 Release date: 2024-03-13 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Continuous evolution of compact protein degradation tags regulated by selective molecular glues. Science, 383, 2024
2RF4	Crystal structure of the RNA Polymerase I subcomplex A14/43 Descriptor: DNA-directed RNA polymerase I subunit RPA4 Authors: Geiger, S.R, Kuhn, C.D, Cramer, P. Deposit date: 2007-09-28 Release date: 2008-01-15 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Functional architecture of RNA polymerase I. Cell(Cambridge,Mass.), 131, 2007
2A68	Crystal structure of the T. thermophilus RNA polymerase holoenzyme in complex with antibiotic rifabutin Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ... Authors: Artsimovitch, I, Vassylyeva, M.N, Svetlov, D, Svetlov, V, Perederina, A, Igarashi, N, Matsugaki, N, Wakatsuki, S, Tahirov, T.H, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-07-01 Release date: 2005-09-20 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins. Cell(Cambridge,Mass.), 122, 2005

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