Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5UAT
DownloadVisualize
BU of 5uat by Molmil
Structure of human PYCR-1 complexed with NADPH
Descriptor: DI(HYDROXYETHYL)ETHER, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Pyrroline-5-carboxylate reductase 1, ...
Authors:Tanner, J.J.
Deposit date:2016-12-20
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Resolving the cofactor-binding site in the proline biosynthetic enzyme human pyrroline-5-carboxylate reductase 1.
J. Biol. Chem., 292, 2017
8QJL
DownloadVisualize
BU of 8qjl by Molmil
SmNuc1 nuclease from Stenotrophomonas maltophilia
Descriptor: GLYCEROL, S1/P1 Nuclease, SULFATE ION, ...
Authors:Adamkova, K, Koval, T, Kolenko, P, Dohnalek, J.
Deposit date:2023-09-13
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Substrate preference, RNA binding and active site versatility of Stenotrophomonas maltophilia nuclease SmNuc1, explained by a structural study.
Febs J., 2024
7YJH
DownloadVisualize
BU of 7yjh by Molmil
Crystal structure of the P450 BM3 heme domain mutant F87V/T268I in complex with N-imidazolyl-pentanoyl-L-phenylalanine and hydroxylamine
Descriptor: (2~{S})-2-(5-imidazol-1-ylpentanoylamino)-3-phenyl-propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, HYDROXYAMINE, ...
Authors:Dong, S, Chen, J, Jiang, Y, Cong, Z, Feng, Y.
Deposit date:2022-07-20
Release date:2023-05-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.792 Å)
Cite:Regiodivergent and Enantioselective Hydroxylation of C-H bonds by Synergistic Use of Protein Engineering and Exogenous Dual-Functional Small Molecules.
Angew.Chem.Int.Ed.Engl., 62, 2023
7MK6
DownloadVisualize
BU of 7mk6 by Molmil
KcsA open gate E71V mutant with sodium
Descriptor: Fab heavy chain, Fab light chain, pH-gated potassium channel KcsA
Authors:Rohaim, A, Li, J, Weingarth, M, Roux, B.
Deposit date:2021-04-21
Release date:2022-03-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V.
Nat Commun, 13, 2022
5UBB
DownloadVisualize
BU of 5ubb by Molmil
Crystal structure of human alpha N-terminal protein methyltransferase 1B
Descriptor: Alpha N-terminal protein methyltransferase 1B, S-ADENOSYLMETHIONINE, UNKNOWN ATOM OR ION
Authors:Dong, C, Zhu, L, Tempel, W, Dong, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2016-12-20
Release date:2017-03-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:An asparagine/glycine switch governs product specificity of human N-terminal methyltransferase NTMT2.
Commun Biol, 1, 2018
7OLB
DownloadVisualize
BU of 7olb by Molmil
Crystal structure of Pab-AGOG, an 8-oxoguanine DNA glycosylase from Pyrococcus abyssi
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ...
Authors:Coste, F, Goffinont, S, Flament, D, Castaing, B.
Deposit date:2021-05-19
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing.
Nucleic Acids Res., 50, 2022
8K9X
DownloadVisualize
BU of 8k9x by Molmil
Crystal structure of plasmodium LysRS complexing with ASP3026 derived LysRS inhibitor 5 (ADKI5)
Descriptor: (2~{S})-2,6-bis(azanyl)-~{N}-[3-[2-[[4-[(2,5-dimethoxyphenyl)amino]-1,3,5-triazin-2-yl]amino]phenyl]sulfonylpropyl]hexanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lysine--tRNA ligase
Authors:Zhou, J, Xia, M, Yang, G, Li, P, Fang, P.
Deposit date:2023-08-01
Release date:2024-06-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure-guided conversion from an anaplastic lymphoma kinase inhibitor into Plasmodium lysyl-tRNA synthetase selective inhibitors.
Commun Biol, 7, 2024
6LU5
DownloadVisualize
BU of 6lu5 by Molmil
Crystal structure of BPTF-BRD with ligand DCBPin5 bound
Descriptor: 6-(1H-indol-5-yl)-N-methyl-2-methylsulfonyl-pyrimidin-4-amine, Nucleosome-remodeling factor subunit BPTF
Authors:Lu, T, Lu, H.B, Wang, J, Lin, H, Lu, W, Luo, C.
Deposit date:2020-01-25
Release date:2021-04-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.86527729 Å)
Cite:Discovery and Optimization of Small-Molecule Inhibitors for the BPTF Bromodomains Proteins
To Be Published
7MHR
DownloadVisualize
BU of 7mhr by Molmil
KcsA E71V closed gate with K+
Descriptor: Fab heavy chain, Fab light chain, POTASSIUM ION, ...
Authors:Rohaim, A, Li, J, Weingarth, M, Roux, B.
Deposit date:2021-04-15
Release date:2022-03-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V.
Nat Commun, 13, 2022
7MHX
DownloadVisualize
BU of 7mhx by Molmil
KcsA E71V closed gate with Ba2+
Descriptor: BARIUM ION, DIACYL GLYCEROL, Fab heavy chain, ...
Authors:Rohaim, A, Li, J, Weingarth, M, Roux, B.
Deposit date:2021-04-15
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V.
Nat Commun, 13, 2022
6LU6
DownloadVisualize
BU of 6lu6 by Molmil
Crystal structure of BPTF-BRD with ligand DCBPin5-2 bound
Descriptor: 6-[1-[3-(dimethylamino)propyl]indol-5-yl]-2-methylsulfonyl-N-propyl-pyrimidin-4-amine, Nucleosome-remodeling factor subunit BPTF
Authors:Lu, T, Lu, H.B, Wang, J, Lin, H, Lu, W, Luo, C.
Deposit date:2020-01-26
Release date:2021-04-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.970063 Å)
Cite:Discovery and Optimization of Small-Molecule Inhibitors for the BPTF Bromodomains Proteins
To Be Published
7UTT
DownloadVisualize
BU of 7utt by Molmil
Structure of Non-hydrolyzable ATP (ApCpp) binds to Cyclic GMP AMP synthase (cGAS) through Mn coordination
Descriptor: Cyclic GMP-AMP synthase, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MANGANESE (II) ION, ...
Authors:Wu, S, Gabelli, S.B, Sohn, J.
Deposit date:2022-04-27
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structure of Non-hydrolyzable ATP (ApCpp) binds to Cyclic GMP AMP synthase (cGAS) through Mn coordination
To Be Published
8JS5
DownloadVisualize
BU of 8js5 by Molmil
Dimeric PAS domains of oxygen sensor FixL with ferric unliganded heme
Descriptor: GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, Sensor protein FixL
Authors:Kamaya, M, Koteishi, H, Sawai, H, Sugimoto, H, Shiro, Y.
Deposit date:2023-06-19
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Dimeric PAS domains of oxygen sensor FixL in complex with imidazole-bound heme.
To be published
7OIW
DownloadVisualize
BU of 7oiw by Molmil
Structure of S. aureus Rel catalytic domains in complex with pppGpp
Descriptor: GLYCEROL, GTP pyrophosphokinase, IODIDE ION, ...
Authors:Garcia-Pino, A.
Deposit date:2021-05-12
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Structure of S. aureus Rel catalytic domains in complex with pppGpp
To Be Published
7UU0
DownloadVisualize
BU of 7uu0 by Molmil
Crystal structure of the BRD2-BD2 in complex with a ligand
Descriptor: 1,2-ETHANEDIOL, Isoform 3 of Bromodomain-containing protein 2, methyl (7S)-7-(thiophen-2-yl)-1,4-thiazepane-4-carboxylate
Authors:Kalra, P, Shi, K, Aihara, H, Pomerantz, W.C.K.
Deposit date:2022-04-28
Release date:2023-05-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of the BRD2-BD2 in complex with a ligand
To Be Published
7XRB
DownloadVisualize
BU of 7xrb by Molmil
human STK19 dimer
Descriptor: CHLORIDE ION, Isoform 2 of Serine/threonine-protein kinase 19, SULFATE ION
Authors:Sun, Q, Li, Y.
Deposit date:2022-05-10
Release date:2023-06-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:human STK19 dimer
To Be Published
7MJT
DownloadVisualize
BU of 7mjt by Molmil
KcsA open gate E71V mutant with Barium
Descriptor: BARIUM ION, Fab heavy chain, Fab light chain, ...
Authors:Rohaim, A, Li, J, Weingarth, M, Roux, B.
Deposit date:2021-04-20
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V.
Nat Commun, 13, 2022
5UBI
DownloadVisualize
BU of 5ubi by Molmil
Catalytic core domain of Adenosine triphosphate phosphoribosyltransferase from Campylobacter jejuni with bound PRPP
Descriptor: 1,2-ETHANEDIOL, 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ACETATE ION, ...
Authors:Mittelstaedt, G, Jiao, W, Livingstone, E.K, Parker, E.J.
Deposit date:2016-12-20
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:A dimeric catalytic core relates the short and long forms of ATP-phosphoribosyltransferase.
Biochem. J., 475, 2018
7UUX
DownloadVisualize
BU of 7uux by Molmil
ATP binds to Cyclic GMP AMP synthase (cGAS) through Mg coordination
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, MAGNESIUM ION, ...
Authors:Wu, S, Gabelli, S.B, Sohn, J.
Deposit date:2022-04-29
Release date:2023-05-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS
Nat Commun, 15, 2024
7OMR
DownloadVisualize
BU of 7omr by Molmil
Crystal structure of coelenteramide-bound Renilla reniformis luciferase RLuc8-D162A variant
Descriptor: Coelenterazine h 2-monooxygenase, GLYCEROL, N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE
Authors:Schenkmayerova, A, Marek, M.
Deposit date:2021-05-24
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Catalytic mechanism for Renilla-type luciferases
Nat Catal, 2023
7M56
DownloadVisualize
BU of 7m56 by Molmil
Structure of human endothelial nitric oxide synthase heme domain in complex with 7-((3-(3-aminophenethyl)phenoxy)methyl)quinolin-2-amine
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5,6,7,8-TETRAHYDROBIOPTERIN, 7-({3-[2-(6-aminopyridin-2-yl)ethyl]phenoxy}methyl)quinolin-2-amine, ...
Authors:Li, H, Poulos, T.L.
Deposit date:2021-03-22
Release date:2022-03-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.957 Å)
Cite:Inhibition of bacterial nitric oxide synthase as an antimicrobial tool in fighting some antibiotic-resistant pathogens
To be published
6M1C
DownloadVisualize
BU of 6m1c by Molmil
Crystal structure of RsmD methyltransferase of M. tuberculosis in complex with sinefungin reveals key interactions
Descriptor: ACETATE ION, Possible methyltransferase (Methylase), SINEFUNGIN
Authors:Bijpuria, S, Khan, S.H, Kumar, A, Taneja, B.
Deposit date:2020-02-25
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Crystal structure of RsmD methyltransferase of M. tuberculosis in complex with sinefungin reveals key interactions
To Be Published
8QVZ
DownloadVisualize
BU of 8qvz by Molmil
Human NDPK-C in complex with cAMP
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Nucleoside diphosphate kinase 3, SULFATE ION
Authors:Werten, S, Amjadi, R, Scheffzek, K.
Deposit date:2023-10-18
Release date:2024-09-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.774 Å)
Cite:Mechanistic Insights into Substrate Recognition of Human Nucleoside Diphosphate Kinase C Based on Nucleotide-Induced Structural Changes.
Int J Mol Sci, 25, 2024
7P7N
DownloadVisualize
BU of 7p7n by Molmil
X-RAY CRYSTAL STRUCTURE OF SPOROSARCINA PASTEURII UREASE INHIBITED BY THE GOLD(I)-PHOSPHINE COMPOUND Au(PEt3)I DETERMINED AT 1.80 ANGSTROMS
Descriptor: 1,2-ETHANEDIOL, GOLD ION, NICKEL (II) ION, ...
Authors:Mazzei, L, Ciurli, S.
Deposit date:2021-07-20
Release date:2022-06-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Medicinal Au(I) compounds targeting urease as prospective antimicrobial agents: unveiling the structural basis for enzyme inhibition.
Dalton Trans, 50, 2021
7UG8
DownloadVisualize
BU of 7ug8 by Molmil
Crystal structure of a solute receptor from Synechococcus CC9311 in complex with alpha-ketovaleric and calcium
Descriptor: 1,2-ETHANEDIOL, 2-oxopentanoic acid, CALCIUM ION, ...
Authors:Shah, B.S, Mikolajek, H, Orr, C.M, Mykhaylyk, V, Owens, R.J, Paulsen, I.T.
Deposit date:2022-03-24
Release date:2023-04-19
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Crystal structure of a solute receptor from Synechococcus CC9311 in complex with alpha-ketovaleric and calcium
To Be Published

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon