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7YPA	Cryo-EM structure of Escherichia coli hairpin-nucleation complex of transcription termination (TTC-hairpin) Descriptor: DNA (31-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: You, L.L, Zhang, Y. Deposit date: 2022-08-03 Release date: 2022-11-16 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Structural basis for intrinsic transcription termination. Nature, 613, 2023
8Q3B	The closed state of the ASFV apo-RNA polymerase Descriptor: DNA-directed RNA polymerase RPB1 homolog, DNA-directed RNA polymerase RPB10 homolog, DNA-directed RNA polymerase RPB2 homolog, ... Authors: Pilotto, S, Sykora, M, Cackett, G, Werner, F. Deposit date: 2023-08-03 Release date: 2024-02-14 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.69 Å) Cite: Structure of the recombinant RNA polymerase from African Swine Fever Virus. Nat Commun, 15, 2024
8Q3K	The open state of the ASFV apo-RNA polymerase Descriptor: DNA-directed RNA polymerase RPB1 homolog, DNA-directed RNA polymerase RPB10 homolog, DNA-directed RNA polymerase RPB2 homolog, ... Authors: Pilotto, S, Sykora, M, Cackett, G, Werner, F. Deposit date: 2023-08-04 Release date: 2024-02-14 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Structure of the recombinant RNA polymerase from African Swine Fever Virus. Nat Commun, 15, 2024
6NSM	TetR family transcriptional regulator CifR C99T-C107S-C181R Cysteines mutant complexed with 26bp double-strand operator DNA Descriptor: DNA (26-MER), TetR family transcriptional regulator CifR Authors: He, S, Simard, A.R, Madden, D.R. Deposit date: 2019-01-25 Release date: 2020-01-29 Last modified: 2024-07-17 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Molecular basis for the transcriptional regulation of an epoxide-based virulence circuit in Pseudomonas aeruginosa Biorxiv, 2024
7B7U	Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2 Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Fianu, I, Dienemann, C, Aibara, S, Schilbach, S, Cramer, P. Deposit date: 2020-12-11 Release date: 2021-05-19 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2. Commun Biol, 4, 2021
8AD1	RNA polymerase at U-rich pause bound to RNA putL triple mutant - pause prone, closed clamp state Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Dey, S, Weixlbaumer, A. Deposit date: 2022-07-07 Release date: 2022-10-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
1SMY	Structural basis for transcription regulation by alarmone ppGpp Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ... Authors: Artsimovitch, I, Patlan, V, Sekine, S, Vassylyeva, M.N, Hosaka, T, Ochi, K, Yokoyama, S, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-03-10 Release date: 2004-05-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis for transcription regulation by alarmone ppGpp Cell(Cambridge,Mass.), 117, 2004
5C44	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-17 Release date: 2015-08-26 Method: X-RAY DIFFRACTION (3.95 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
7ASU	Crystal structure of tWHD1 of Rpc5 subunit of human RNA Polymerase III Descriptor: DNA-directed RNA polymerase III subunit RPC5, ZINC ION Authors: Vannini, A, Abascal-Palacios, G, Ramsay, E.P. Deposit date: 2020-10-28 Release date: 2020-12-30 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Structure of human RNA polymerase III. Nat Commun, 11, 2020
6MGM	Helix-Loop-helix motif of mouse DNA-binding protein inhibitor ID-1 Descriptor: DNA-binding protein inhibitor ID-1 Authors: Benezra, R, Pavletich, N.P, Goldgur, Y, Gall, A.-L. Deposit date: 2018-09-14 Release date: 2019-09-18 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.791 Å) Cite: A Small-Molecule Pan-Id Antagonist Inhibits Pathologic Ocular Neovascularization. Cell Rep, 29, 2019
6FLQ	CryoEM structure of E.coli RNA polymerase paused elongation complex bound to NusA Descriptor: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Guo, X, Weixlbaumer, A. Deposit date: 2018-01-26 Release date: 2018-03-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural Basis for NusA Stabilized Transcriptional Pausing. Mol. Cell, 69, 2018
5C4X	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Spahr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-18 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (4 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
6GML	Structure of paused transcription complex Pol II-DSIF-NELF Descriptor: DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... Authors: Vos, S.M, Farnung, L, Urlaub, H, Cramer, P. Deposit date: 2018-05-27 Release date: 2018-09-05 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structure of paused transcription complex Pol II-DSIF-NELF. Nature, 560, 2018
5C4A	Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Barnes, C.O, Calero, M, Malik, I, Saphr, H, Zhang, Q, Pullara, F, Kaplan, C.D, Calero, G. Deposit date: 2015-06-17 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (4.2 Å) Cite: Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble. Mol.Cell, 59, 2015
4TMA	Crystal structure of gyrase bound to its inhibitor YacG Descriptor: DNA gyrase inhibitor YacG, DNA gyrase subunit A, DNA gyrase subunit B, ... Authors: Vos, S.M, Lyubimov, A.Y, Hershey, D.M, Schoeffler, A.J, Berger, J.M. Deposit date: 2014-05-31 Release date: 2014-07-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Direct control of type IIA topoisomerase activity by a chromosomally encoded regulatory protein. Genes Dev., 28, 2014
8EVJ	CX3CR1 nucleosome bound PU.1 and C/EBPa Descriptor: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Guan, R, Bai, Y, Lian, T. Deposit date: 2022-10-20 Release date: 2023-11-01 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha. Nat.Struct.Mol.Biol., 31, 2024
8EVI	CX3CR1 nucleosome and PU.1 complex containing disulfide bond mutations Descriptor: DNA (167-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Lian, T, Guan, R, Bai, Y. Deposit date: 2022-10-20 Release date: 2023-11-01 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha. Nat.Struct.Mol.Biol., 31, 2024
8EVH	CX3CR1 nucleosome and wild type PU.1 complex Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Lian, T, Guan, R, Bai, Y. Deposit date: 2022-10-20 Release date: 2023-11-01 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha. Nat.Struct.Mol.Biol., 31, 2024
8W9E	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 2 Descriptor: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... Authors: Wang, C, Zhan, X. Deposit date: 2023-09-05 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
8W9F	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 3 Descriptor: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... Authors: Wang, C, Zhan, X. Deposit date: 2023-09-05 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
6L8N	Crystal structure of the K. lactis Rad5 Descriptor: DNA repair protein RAD5, ZINC ION Authors: Shen, M, Xiang, S. Deposit date: 2019-11-06 Release date: 2020-11-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural basis for the multi-activity factor Rad5 in replication stress tolerance. Nat Commun, 12, 2021
8H0V	RNA polymerase II transcribing a chromatosome (type I) Descriptor: DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... Authors: Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H. Deposit date: 2022-09-30 Release date: 2022-12-07 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1. Nat Commun, 13, 2022
8H0W	RNA polymerase II transcribing a chromatosome (type II) Descriptor: DNA (261-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... Authors: Hirano, R, Ehara, H, Tomoya, K, Takizawa, Y, Sekine, S, Kurumizaka, H. Deposit date: 2022-09-30 Release date: 2022-12-07 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H1. Nat Commun, 13, 2022
8W9D	Cryo-EM structure of the Rpd3S-nucleosome complex from budding yeast in State 1 Descriptor: 3-DNA, 5-DNA, Chromatin modification-related protein EAF3, ... Authors: Wang, C, Zhan, X. Deposit date: 2023-09-05 Release date: 2024-05-15 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structures and dynamics of Rpd3S complex bound to nucleosome. Sci Adv, 10, 2024
8HE5	RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome Descriptor: DNA (198-MER), DNA repair protein, DNA-directed RNA polymerase subunit, ... Authors: Osumi, K, Kujirai, T, Ehara, H, Kinoshita, C, Saotome, M, Kagawa, W, Sekine, S, Takizawa, Y, Kurumizaka, H. Deposit date: 2022-11-07 Release date: 2023-07-05 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (6.95 Å) Cite: Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome. J.Mol.Biol., 435, 2023

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