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1DJD	THE SOLUTION STRUCTURE OF A NON-BAY REGION 11R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE Descriptor: 8,9,10,11-TETRAHYDRO-BENZO[A]ANTHRACENE-8,9,10-TRIOL, DNA(5'-D(*CT*GT*GT*AT*CT*AT*AT*GT*AT*AT*G)-3'), DNA(5'-D(*CT*TT*TT*CT*TT*TT*GT*TT*CT*CT*G)-3') Authors: Li, Z, Kim, H.Y, Tamura, P.J, Harris, C.M, Harris, T.M, Stone, M.P. Deposit date: 1999-12-02 Release date: 1999-12-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Role of a polycyclic aromatic hydrocarbon bay region ring in modulating DNA adduct structure: the non-bay region (8S,9R,10S, 11R)-N(6)-[11-(8,9,10,11-tetrahydro-8,9, 10-trihydroxybenz[a]anthracenyl)]-2' -deoxyadenosyl adduct in codon 61 of the human N-ras protooncogene Biochemistry, 38, 1999
6EKO	Crystal structure of Type IIP restriction endonuclease PfoI with cognate DNA Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*CP*TP*CP*CP*CP*GP*GP*AP*GP*CP*GP*T)-3'), Restriction endonuclease PfoI Authors: Tamulaitiene, G, Manakova, E, Jovaisaite, V, Grazulis, S, Siksnys, V. Deposit date: 2017-09-26 Release date: 2018-10-10 Last modified: 2019-04-24 Method: X-RAY DIFFRACTION (2.284 Å) Cite: Unique mechanism of target recognition by PfoI restriction endonuclease of the CCGG-family. Nucleic Acids Res., 47, 2019
1IR5	Solution Structure of the 17mer TF1 Binding Site Descriptor: 5'-D(*CP*AP*CP*TP*AP*CP*AP*AP*AP*GP*AP*GP*TP*AP*GP*TP*G)-3', 5'-D(*CP*AP*CP*TP*AP*CP*TP*CP*TP*TP*TP*GP*TP*AP*GP*TP*G)-3' Authors: Liu, W, Vu, H.M, Kearns, D.R. Deposit date: 2001-09-07 Release date: 2003-09-23 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: 1H NMR studies of a 17-mer DNA duplex ACTA BIOCHIM.BIOPHYS.SINICA, 1574, 2002
8BD4	TniQ-capped Tns-ATP-dsDNA complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*GP*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*C)-3'), MAGNESIUM ION, ... Authors: Querques, I, Schmitz, M, Oberli, S, Chanez, C, Jinek, M. Deposit date: 2022-10-18 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Structural basis for the assembly of the type V CRISPR-associated transposon complex. Cell, 185, 2022
6SJ9	Proteasome accessory factor B/C (PafBC) of Arthrobacter aurescens Descriptor: DI(HYDROXYETHYL)ETHER, POTASSIUM ION, Proteasome accessory factor B/C (PafBC), ... Authors: Mueller, A.U, Leibundgut, M, Ban, N, Weber-Ban, E. Deposit date: 2019-08-13 Release date: 2019-10-16 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure and functional implications of WYL domain-containing bacterial DNA damage response regulator PafBC. Nat Commun, 10, 2019
1FC8	NMR SOLUTION STRUCTURE OF A CHIMERIC OLIGONUCLEOTIDE HAIRPIN R(GGAC)D(TTCG)2'F-A(GTCC) Descriptor: 5'-R(*GP*GP*AP*CP)D(*TP*TP*CP*GP*(GFL)P*(TAF)P*(CFL)P*(CFL))-3' Authors: Trempe, J.-F, Gehring, K. Deposit date: 2000-07-18 Release date: 2001-05-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes. J.Am.Chem.Soc., 123, 2001
1FOQ	PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA Descriptor: BACTERIOPHAGE PHI29 PROHEAD RNA Authors: Simpson, A.A, Tao, Y, Leiman, P.G, Badasso, M.O, He, Y, Jardine, P.J, Olson, N.H, Morais, M.C, Grimes, S, Anderson, D.L, Baker, T.S, Rossmann, M.G. Deposit date: 2000-08-28 Release date: 2000-12-22 Last modified: 2024-02-07 Method: ELECTRON MICROSCOPY (20 Å) Cite: Structure of the bacteriophage phi29 DNA packaging motor. Nature, 408, 2000
3UXU	The structure of the catalytic domain of the Sulfolobus Spindle-shaped viral integrase reveals an evolutionarily conserved catalytic core and supports a mechanism of DNA cleavage in trans Descriptor: PHOSPHATE ION, Probable integrase Authors: Eilers, B.J, Young, M.J, Lawrence, C.M. Deposit date: 2011-12-05 Release date: 2012-05-16 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.706 Å) Cite: The Structure of an Archaeal Viral Integrase Reveals an Evolutionarily Conserved Catalytic Core yet Supports a Mechanism of DNA Cleavage in trans. J.Virol., 86, 2012
3IMB	Alternative binding mode of restriction endonuclease BcnI to cognate DNA Descriptor: 5'-D(*CP*GP*CP*CP*CP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*GP*GP*GP*CP*G)-3', R.BcnI Authors: Sokolowska, M, Kaus-Drobek, M, Czapinska, H, Tamulaitis, G, Szczepanowski, R.H, Siksnys, V, Bochtler, M. Deposit date: 2009-08-10 Release date: 2010-08-11 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.89 Å) Cite: How BcnI and MvaI distinguish W from S To be Published
2OAA	Restriction endonuclease MvaI-cognate DNA substrate complex Descriptor: 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3', CALCIUM ION, ... Authors: Kaus-Drobek, M, Czapinska, H, Sokolowska, M, Tamulaitis, G, Szczepanowski, R.H, Urbanke, K, Siksnys, V, Bochtler, M. Deposit date: 2006-12-15 Release date: 2007-02-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically. Nucleic Acids Res., 35, 2007
6NTU	Crystal Structure of human PARP-1 ART domain bound to inhibitor UKTT-15 Descriptor: DIMETHYL SULFOXIDE, PENTAETHYLENE GLYCOL, Poly [ADP-ribose] polymerase 1, ... Authors: Langelier, M.F, Pascal, J.M. Deposit date: 2019-01-30 Release date: 2020-02-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for allosteric PARP-1 retention on DNA breaks. Science, 368, 2020
2XKK	CRYSTAL STRUCTURE OF MOXIFLOXACIN, DNA, and A. BAUMANNII TOPO IV (PARE-PARC FUSION TRUNCATE) Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA, MAGNESIUM ION, ... Authors: Wohlkonig, A, Chan, P.F, Fosberry, A.P, Homes, P, Huang, J, Kranz, M, Leydon, V.R, Miles, T.J, Pearson, N.D, Perera, R.L, Shillings, A.J, Gwynn, M.N, Bax, B.D. Deposit date: 2010-07-08 Release date: 2010-09-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.25 Å) Cite: Structural Basis of Quinolone Inhibition of Type Iia Topoisomerases and Target-Mediated Resistance Nat.Struct.Mol.Biol., 17, 2010
3WX4	CRYSTAL STRUCTURE of T4 PHAGE ARN PROTEIN Descriptor: Anti-restriction endonuclease Authors: Ho, C.H, Wang, H.C, Ko, T.P, Wang, A.H.J. Deposit date: 2014-07-16 Release date: 2014-08-20 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The T4 phage DNA mimic protein Arn inhibits the DNA binding activity of the bacterial histone-like protein H-NS J.Biol.Chem., 289, 2014
3ZQN	Crystal structure of the small terminase oligomerization core domain from a SPP1-like bacteriophage (crystal form 2) Descriptor: TERMINASE SMALL SUBUNIT Authors: Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A. Deposit date: 2011-06-10 Release date: 2011-12-28 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor. Proc.Natl.Acad.Sci.USA, 109, 2012
1TNS	A NOVEL CLASS OF WINGED HELIX-TURN-HELIX PROTEIN: THE DNA-BINDING DOMAIN OF MU TRANSPOSASE Descriptor: MU-TRANSPOSASE Authors: Clore, G.M, Clubb, R.T, Omichinski, J.G, Gronenborn, A.M. Deposit date: 1994-10-10 Release date: 1995-02-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposase. Structure, 2, 1994
1TNT	A NOVEL CLASS OF WINGED HELIX-TURN-HELIX PROTEIN: THE DNA-BINDING DOMAIN OF MU TRANSPOSASE Descriptor: MU-TRANSPOSASE Authors: Clore, G.M, Clubb, R.T, Omichinski, J.G, Gronenborn, A.M. Deposit date: 1994-10-10 Release date: 1995-02-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposase. Structure, 2, 1994
3ZQO	Crystal structure of the small terminase oligomerization core domain from a SPP1-like bacteriophage (crystal form 3) Descriptor: POTASSIUM ION, TERMINASE SMALL SUBUNIT Authors: Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A. Deposit date: 2011-06-10 Release date: 2011-12-28 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor. Proc.Natl.Acad.Sci.USA, 109, 2012
6K5X	Crystal Structure of the DNA-Binding Domain of GapR Descriptor: SULFATE ION, UPF0335 protein CCNA_03428 Authors: Xia, B, Huang, Q. Deposit date: 2019-05-31 Release date: 2020-06-03 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.086 Å) Cite: Crystal Structure of the DNA-Binding Domain of GapR To Be Published
1LPQ	Human DNA Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair DNA Duplex Containing an 8-oxoG Lesion Descriptor: 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*(8OG)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3', DNA topoisomerase I Authors: Lesher, D.T, Pommier, Y, Stewart, L, Redinbo, M.R. Deposit date: 2002-05-08 Release date: 2002-08-16 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.14 Å) Cite: 8-Oxoguanine rearranges the active site of human topoisomerase I Proc.Natl.Acad.Sci.USA, 99, 2002
2XCT	The twinned 3.35A structure of S. aureus Gyrase complex with Ciprofloxacin and DNA Descriptor: 1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIPERAZIN-1-YL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID, 5'-D(AP*GP*CP*CP*GP*TP*AP*G)-3', 5'-D(GP*TP*AP*CP*AP*CP*CP*GP*CP*AP*CP*A)-3', ... Authors: Bax, B.D, Chan, P, Eggleston, D.S, Fosberry, A, Gentry, D.R, Gorrec, F, Giordano, I, Hann, M.M, Hennessy, A, Hibbs, M, Huang, J, Jones, E, Jones, J, Brown, K.K, Lewis, C.J, May, E, Singh, O, Spitzfaden, C, Shen, C, Shillings, A, Theobald, A, Wohlkonig, A, Pearson, N.D, Gwynn, M.N. Deposit date: 2010-04-25 Release date: 2010-08-25 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Type Iia Topoisomerase Inhibition by a New Class of Antibacterial Agents. Nature, 466, 2010
4LMD	Crystal structure of the JCV large t-antigen origin binding domain Descriptor: CITRATE ANION, GLYCEROL, Large T antigen Authors: Meinke, G, Bohm, A, Bullock, P. Deposit date: 2013-07-10 Release date: 2014-04-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Insights into the Initiation of JC Virus DNA Replication Derived from the Crystal Structure of the T-Antigen Origin Binding Domain. Plos Pathog., 10, 2014
3ZFK	N-terminal truncated Nuclease Domain of Colicin E7 Descriptor: ACETATE ION, CHLORIDE ION, COLICIN-E7, ... Authors: Toth, E, Czene, A, Gyurcsik, B, Otten, H, Poulsen, J.-C.N, Larsen, S, Christensen, H.E.M, Nagata, K. Deposit date: 2012-12-11 Release date: 2013-12-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A New Insight Into the Zinc-Dependent DNA-Cleavage by the Colicin E7 Nuclease: A Crystallographic and Computational Study. Metallomics, 6, 2014
4DOV	Structure of free mouse ORC1 BAH domain Descriptor: Origin recognition complex subunit 1 Authors: Song, J, Patel, D.J. Deposit date: 2012-02-10 Release date: 2012-03-07 Last modified: 2012-04-11 Method: X-RAY DIFFRACTION (1.696 Å) Cite: The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature, 484, 2012
7LW0	Structural and Biochemical Insight into Assembly of Molecular Motors Involved in Viral DNA Packaging Descriptor: Terminase small subunit Authors: Ortega, M.E. Deposit date: 2021-02-26 Release date: 2022-03-02 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Structural and Biochemical Insight into Assembly of Molecular Motors Involved in Viral DNA Packaging To Be Published
7LIU	DDX3X bound to ATP analog and remodeled RNA:DNA hybrid Descriptor: 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3', ATP-dependent RNA helicase DDX3X, MAGNESIUM ION, ... Authors: Enemark, E.J, Yu, S. Deposit date: 2021-01-27 Release date: 2022-08-24 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.001 Å) Cite: DDX3X bound to ATP analog and remodeled RNA:DNA hybrid To Be Published

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