PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

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6DOI	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid (1.54 Angstrom wavelength): Soak in 0.5 mM EGTA and 200 mM K+ at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), 5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-22 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.948 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DOQ	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C (dataset 2) Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.422 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DP5	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 40 mM Mg2+ and 75 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.432 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DPG	Crystal Structure of Bacillus Halodurans Ribonuclease H1 E188A in Complex with an RNA/DNA Hybrid: Reaction in 4 mM Mn2+ and 200 mM K+ for 240 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
1AA3	C-TERMINAL DOMAIN OF THE E. COLI RECA, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: RECA Authors: Aihara, H, Ito, Y, Kurumizaka, H, Terada, T, Yokoyama, S, Shibata, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 1997-01-22 Release date: 1997-07-23 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing. J.Mol.Biol., 274, 1997
2H7G	Structure of variola topoisomerase non-covalently bound to DNA Descriptor: 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*TP*A)-3', DNA topoisomerase 1 Authors: Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D. Deposit date: 2006-06-02 Release date: 2006-08-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for specificity in the poxvirus topoisomerase. Mol.Cell, 23, 2006
2B1D	5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3' Methionine Repressor binding site Descriptor: 5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION Authors: Berman, H.M, Locasale, J.W, Napoli, A.A. Deposit date: 2005-09-15 Release date: 2005-09-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Signatures of protein-DNA recognition in free DNA binding sites. J.Mol.Biol., 386, 2009
4L60	Structure of C81R Mutant PCNA Protein Defective in Mismatch Repair Descriptor: Proliferating cell nuclear antigen Authors: Washington, T, Boehm, E. Deposit date: 2013-06-11 Release date: 2013-10-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.003 Å) Cite: Distinct structural alterations in proliferating cell nuclear antigen block DNA mismatch repair. Biochemistry, 52, 2013
6DOB	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 200 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.343 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DOL	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 25 mM K+ for 120 s at 21 C (dataset 2) Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), 5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.433 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DOZ	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 1 mM Mg2+ and 75 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.573 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
6DPE	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 20 mM Mn2+ and 200 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
1T03	HIV-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex P) Descriptor: MAGNESIUM ION, POL polyprotein, Synthetic oligonucleotide primer, ... Authors: Tuske, S, Sarafianos, S.G, Ding, J, Arnold, E. Deposit date: 2004-04-07 Release date: 2004-05-11 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir Nat.Struct.Mol.Biol., 11, 2004
6EKO	Crystal structure of Type IIP restriction endonuclease PfoI with cognate DNA Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*CP*TP*CP*CP*CP*GP*GP*AP*GP*CP*GP*T)-3'), Restriction endonuclease PfoI Authors: Tamulaitiene, G, Manakova, E, Jovaisaite, V, Grazulis, S, Siksnys, V. Deposit date: 2017-09-26 Release date: 2018-10-10 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.284 Å) Cite: Unique mechanism of target recognition by PfoI restriction endonuclease of the CCGG-family. Nucleic Acids Res., 47, 2019
1TL6	Solution structure of T4 bacteriphage AsiA monomer Descriptor: 10 kDa anti-sigma factor Authors: Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H. Deposit date: 2004-06-09 Release date: 2005-06-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: T4 AsiA blocks DNA recognition by remodeling sigma70 region 4 Embo J., 23, 2004
378D	STRUCTURE OF THE SIDE-BY-SIDE BINDING OF DISTAMYCIN TO DNA Descriptor: DISTAMYCIN A, DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3'), SODIUM ION Authors: Mitra, S.N, Wahl, M.C, Sundaralingam, M. Deposit date: 1998-01-28 Release date: 1999-03-04 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of the side-by-side binding of distamycin to d(GTATATAC)2. Acta Crystallogr.,Sect.D, 55, 1999
1RV5	COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT) Descriptor: 5'-D(*AP*AP*AP*GP*AP*T*AP*TP*CP*TP*T)-3', ECORV ENDONUCLEASE Authors: Horton, N.C, Perona, J.J. Deposit date: 1998-06-01 Release date: 1998-11-11 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Role of protein-induced bending in the specificity of DNA recognition: crystal structure of EcoRV endonuclease complexed with d(AAAGAT) + d(ATCTT). J.Mol.Biol., 277, 1998
3TND	Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex Descriptor: Antitoxin VapB, SODIUM ION, SULFATE ION, ... Authors: Dienemann, C, Boggild, A, Winther, K.S, Gerdes, K, Brodersen, D.E. Deposit date: 2011-09-01 Release date: 2011-11-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure of the VapBC Toxin-Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly. J.Mol.Biol., 414, 2011
5C12	Nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 Descriptor: Gene 2 protein, MAGNESIUM ION Authors: Zhao, H, Tang, L. Deposit date: 2015-06-12 Release date: 2015-10-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.517 Å) Cite: Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
4LTY	Crystal Structure of E.coli SbcD at 1.8 A Resolution Descriptor: Exonuclease subunit SbcD, GLYCEROL Authors: Liu, S, Tian, L.F, Yan, X.X, Liang, D.C. Deposit date: 2013-07-24 Release date: 2014-02-26 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for DNA recognition and nuclease processing by the Mre11 homologue SbcD in double-strand breaks repair. Acta Crystallogr.,Sect.D, 70, 2014
1ZPQ	STRUCTURE OF BACTERIOPHAGE LAMBDA CII protein Descriptor: Regulatory protein CII Authors: Jain, D, Kim, Y, Maxwell, K.L, Beasley, S, Gussin, G.N, Edwards, A.M, Joachimiak, A, Darst, S.A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2005-05-17 Release date: 2005-08-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal Structure of Bacteriophage lambdacII and Its DNA Complex. Mol.Cell, 19, 2005
1Z1G	Crystal structure of a lambda integrase tetramer bound to a Holliday junction Descriptor: 25-MER, 29-MER, 5'-D(*AP*CP*AP*GP*GP*TP*CP*AP*CP*TP*AP*TP*CP*AP*GP*TP*CP*AP*AP*AP*AP*TP*AP*CP*C)-3', ... Authors: Biswas, T, Aihara, H, Radman-Livaja, M, Filman, D, Landy, A, Ellenberger, T. Deposit date: 2005-03-03 Release date: 2005-06-28 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (4.4 Å) Cite: A structural basis for allosteric control of DNA recombination by lambda integrase. Nature, 435, 2005
5C2F	K428A mutant nuclease domain of the large terminase subunit gp2 of bacterial virus Sf6 with Manganese and beta-thujaplicinol Descriptor: 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one, Gene 2 protein, MANGANESE (II) ION Authors: Zhao, H, Tang, L. Deposit date: 2015-06-15 Release date: 2015-10-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism. Nucleic Acids Res., 43, 2015
8G10	Structure of Ternary Complex of cGAS with dsDNA and Bound ITP and GTP Descriptor: Cyclic GMP-AMP synthase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Wu, S, Sohn, J. Deposit date: 2023-02-01 Release date: 2024-05-22 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.47 Å) Cite: The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS. Nat Commun, 15, 2024
6TUP	Cryo-EM structure of Pf4 bacteriophage coat protein with single-stranded DNA Descriptor: Coat protein B of bacteriophage Pf1, DNA (5'-D(P*AP*AP*AP*AP*AP*A)-3') Authors: Tarafder, A.K, von Kugelgen, A, Bharat, T.A.M. Deposit date: 2020-01-08 Release date: 2020-02-26 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Phage liquid crystalline droplets form occlusive sheaths that encapsulate and protect infectious rod-shaped bacteria. Proc.Natl.Acad.Sci.USA, 117, 2020

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