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1YNC
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BU of 1ync by Molmil
NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor
Descriptor: apolipoprotein B mRNA
Authors:Maris, C, Masse, J, Allain, F.H, Chester, A, Navaratnam, N.
Deposit date:2005-01-24
Release date:2005-02-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor.
Rna, 11, 2005
1YLG
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BU of 1ylg by Molmil
NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor
Descriptor: apolipoprotein B mRNA
Authors:Maris, C, Masse, J, Allain, F.H, Chester, A, Navaratnam, N.
Deposit date:2005-01-19
Release date:2005-02-01
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor.
Rna, 11, 2005
6YHZ
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BU of 6yhz by Molmil
UvrD helicase RNA polymerase interactions are governed by UvrDs carboxy terminal Tudor domain.
Descriptor: Transcription-repair-coupling factor
Authors:Kawale, A.A, Burmann, B.B.
Deposit date:2020-03-31
Release date:2020-10-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:UvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain.
Commun Biol, 3, 2020
6YI2
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BU of 6yi2 by Molmil
UvrD helicase RNA polymerase interactions are governed by UvrDs carboxy terminal Tudor domain.
Descriptor: DNA helicase
Authors:Kawale, A.A, Burmann, B.B.
Deposit date:2020-03-31
Release date:2020-10-21
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:UvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain.
Commun Biol, 3, 2020
2XUB
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BU of 2xub by Molmil
Human RPC62 subunit structure
Descriptor: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3
Authors:Lefevre, S, Legrand, P, Fribourg, S.
Deposit date:2010-10-18
Release date:2011-03-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Function Analysis of Hrpc62 Provides Insights Into RNA Polymerase III Transcription
Nat.Struct.Mol.Biol., 18, 2011
2XV4
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BU of 2xv4 by Molmil
Structure of Human RPC62 (partial)
Descriptor: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3, PHOSPHATE ION
Authors:Lefevre, S, Legrand, P, Fribourg, S.
Deposit date:2010-10-22
Release date:2011-03-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure-Function Analysis of Hrpc62 Provides Insights Into RNA Polymerase III Transcription
Nat.Struct.Mol.Biol., 18, 2011
4IMJ
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BU of 4imj by Molmil
Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine-tune the Phosphatase Activity of Ssu72
Descriptor: CG14216, CTD, PHOSPHATE ION, ...
Authors:Luo, Y, Yogesha, S.D, Zhang, Y.
Deposit date:2013-01-03
Release date:2013-08-07
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72.
Acs Chem.Biol., 8, 2013
4IMI
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BU of 4imi by Molmil
Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine- tune the Phosphatase Activity of Ssu72.
Descriptor: CG14216, CTD, PHOSPHATE ION, ...
Authors:Luo, Y, Yogesha, S.D, Zhang, Y.
Deposit date:2013-01-03
Release date:2013-08-07
Last modified:2013-10-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72.
Acs Chem.Biol., 8, 2013
1SZA
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BU of 1sza by Molmil
The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model
Descriptor: CTD-peptide, PCF11 protein
Authors:Meinhart, A, Cramer, P.
Deposit date:2004-04-05
Release date:2004-07-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors.
Nature, 430, 2004
2M6O
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BU of 2m6o by Molmil
The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase
Descriptor: Uncharacterized protein
Authors:Liu, B, Tabib-Salazar, A, Doughty, P, Lewis, R, Ghosh, S, Parsy, M, Simpson, P, Matthews, S, Paget, M.
Deposit date:2013-04-06
Release date:2013-05-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase.
Nucleic Acids Res., 41, 2013
2M6P
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BU of 2m6p by Molmil
The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase
Descriptor: uncharacterized protein Mb2076
Authors:Liu, B, Parsy, M, Paget, M, Matthews, S.
Deposit date:2013-04-06
Release date:2013-05-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase.
Nucleic Acids Res., 41, 2013
4GWP
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BU of 4gwp by Molmil
Structure of the Mediator Head Module from S. cerevisiae
Descriptor: Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, ...
Authors:Robinson, P.J.J, Bushnell, D.A, Trnka, M.J, Burlingame, A.L, Kornberg, R.D.
Deposit date:2012-09-03
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II.
Proc.Natl.Acad.Sci.USA, 109, 2012
2JC1
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BU of 2jc1 by Molmil
CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB698223
Descriptor: (2S,4S,5R)-1-(4-TERT-BUTYLBENZOYL)-2-ISOBUTYL-5-(1,3-THIAZOL-2-YL)PYRROLIDINE-2,4-DICARBOXYLIC ACID, RNA-DEPENDENT RNA-POLYMERASE
Authors:Wonacott, A, Skarzynski, T, Singh, O.M.
Deposit date:2006-12-18
Release date:2007-02-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Optimization of Novel Acyl Pyrrolidine Inhibitors of Hepatitis C Virus RNA-Dependent RNA Polymerase Leading to a Development Candidate.
J.Med.Chem., 50, 2007
2JC0
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BU of 2jc0 by Molmil
CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB655264
Descriptor: (2S,4S,5R)-2-ISOBUTYL-5-(2-THIENYL)-1-[4-(TRIFLUOROMETHYL)BENZOYL]PYRROLIDINE-2,4-DICARBOXYLIC ACID, RNA-DEPENDENT RNA-POLYMERASE
Authors:Wonacott, A, Skarzynski, T, Singh, O.M.
Deposit date:2006-12-18
Release date:2007-02-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Optimization of Novel Acyl Pyrrolidine Inhibitors of Hepatitis C Virus RNA-Dependent RNA Polymerase Leading to a Development Candidate.
J.Med.Chem., 50, 2007
4QJF
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BU of 4qjf by Molmil
X-ray crystal structure of Thermocuccus kodakarensis RNA polymerase Rpp4/Rpo7 (RpoF/RpoE) complex
Descriptor: DNA-directed RNA polymerase, subunit E', subunit F
Authors:Murakami, K.S.
Deposit date:2014-06-03
Release date:2014-10-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.312 Å)
Cite:Crystal structure of euryarchaeal RNA polymerase and insight into the evolution of RNA polymerase II structure
Nat.Commun., 2014
1SZ9
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BU of 1sz9 by Molmil
The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model
Descriptor: PCF11 protein
Authors:Meinhart, A, Cramer, P.
Deposit date:2004-04-05
Release date:2004-07-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors.
Nature, 430, 2004
1YNE
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BU of 1yne by Molmil
NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor
Descriptor: APOLIPOPROTEIN B mRNA
Authors:Maris, C, Masse, J, Allain, F.H, Chester, A, Navaratnam, N.
Deposit date:2005-01-24
Release date:2005-02-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor.
Rna, 11, 2005
1YNG
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BU of 1yng by Molmil
NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor
Descriptor: apolipoprotein B mRNA
Authors:Maris, C, Masse, J, Allain, F.H, Chester, A, Navaratnam, N.
Deposit date:2005-01-24
Release date:2005-02-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor.
Rna, 11, 2005
5TSN
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BU of 5tsn by Molmil
Crystal structures of Norwalk virus polymerase bound to an RNA primer-template duplex
Descriptor: MANGANESE (II) ION, Norwalk virus polymerase, RNA (5'-R(*UP*GP*CP*CP*CP*GP*GP*G)-3')
Authors:Shaik, M.M, Ng, K.K.
Deposit date:2016-10-30
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Norovirus RNA-dependent RNA polymerase: A computational study of metal-binding preferences.
Proteins, 85, 2017
4C11
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BU of 4c11 by Molmil
Dengue virus RNA dependent RNA polymerase with residues from the NS5 linker region
Descriptor: DENGUE VIRUS TYPE 3 RNA DEPENDENT RNA POLYMERASE, ZINC ION
Authors:Lim, S.P, Lescar, J.
Deposit date:2013-08-09
Release date:2013-08-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Crystal Structure of the Dengue Virus Ns5 Polymerase Delineates Inter-Domain Amino Acids Residues that Enhance its Thermostability and De Novo Initiation Activities.
J.Biol.Chem., 288, 2013
3OMW
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BU of 3omw by Molmil
Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II
Descriptor: CG14216
Authors:Zhang, Y, Zhang, M, Zhang, Y.
Deposit date:2010-08-27
Release date:2011-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8701 Å)
Cite:Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II, in complex with a transition state analogue.
Biochem.J., 434, 2011
3FRZ
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BU of 3frz by Molmil
Crystal Structure of HCV NS5B RNA polymerase in complex with PF868554
Descriptor: (6R)-6-cyclopentyl-6-[2-(2,6-diethylpyridin-4-yl)ethyl]-3-[(5,7-dimethyl[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)methyl]-4-hydroxy-5,6-dihydro-2H-pyran-2-one, BETA-MERCAPTOETHANOL, N-[(benzyloxy)carbonyl]-L-alpha-glutamyl-N-[(1S)-4-oxo-4-phenyl-1-propylbut-2-en-1-yl]-L-phenylalaninamide, ...
Authors:Parge, H.E.
Deposit date:2009-01-08
Release date:2009-03-10
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Discovery of (R)-6-cyclopentyl-6-(2-(2,6-diethylpyridin-4-yl)ethyl)-3-((5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)methyl)-4-hydroxy-5,6-dihydropyran-2-one (PF-00868554) as a potent and orally available hepatitis C virus polymerase inhibitor.
J.Med.Chem., 52, 2009
2J7W
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BU of 2j7w by Molmil
Dengue virus NS5 RNA dependent RNA polymerase domain complexed with 3' dGTP
Descriptor: DI(HYDROXYETHYL)ETHER, GUANOSINE-5'-TRIPHOSPHATE, POLYPROTEIN, ...
Authors:Yap, T.L, Xu, T, Chen, Y.L, Malet, H, Egloff, M.P, Canard, B, Vasudevan, S.G, Lescar, J.
Deposit date:2006-10-17
Release date:2007-03-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the Dengue Virus RNA- Dependent RNA Polymerase Catalytic Domain at 1.85 Angstrom Resolution.
J.Virol., 81, 2007
3FMV
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BU of 3fmv by Molmil
Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253.
Descriptor: Serine phosphatase of RNA polymerase II CTD
Authors:Kuzin, A.P, Chen, Y, Seetharaman, J, Forouhar, F, Chinag, Y, Fang, Y, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-12-22
Release date:2009-01-06
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253.
To be Published
2DXS
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BU of 2dxs by Molmil
Crystal structure of HCV NS5B RNA polymerase complexed with a tetracyclic inhibitor
Descriptor: Genome polyprotein, N-[(13-CYCLOHEXYL-6,7-DIHYDROINDOLO[1,2-D][1,4]BENZOXAZEPIN-10-YL)CARBONYL]-2-METHYL-L-ALANINE
Authors:Adachi, T, Tsuruha, J, Doi, S, Murase, K, Ikegashira, K, Watanabe, S, Uehara, K, Orita, T, Nomura, A, Kamada, M.
Deposit date:2006-08-30
Release date:2006-12-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of Conformationally Constrained Tetracyclic Compounds as Potent Hepatitis C Virus NS5B RNA Polymerase Inhibitors
J.Med.Chem., 49, 2006

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