Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8YB5
DownloadVisualize
BU of 8yb5 by Molmil
SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C6 symmetry)
Descriptor: Non-structural protein 4, Papain-like protease nsp3
Authors:Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T.
Deposit date:2024-02-11
Release date:2024-06-19
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Molecular architecture of coronavirus double-membrane vesicle pore complex.
Nature, 633, 2024
8YB4
DownloadVisualize
BU of 8yb4 by Molmil
Pfr conformer of Arabidopsis thaliana phytochrome B in complex with phytochrome-interacting factor 6
Descriptor: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, phytochrome B, phytochrome-interacting factor 6
Authors:Wang, Z, Wang, W, Zhao, D, Song, Y, Xu, B, Zhao, J, Wang, J.
Deposit date:2024-02-11
Release date:2024-10-02
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Light-induced remodeling of phytochrome B enables signal transduction by phytochrome-interacting factor.
Cell, 187, 2024
8YB6
DownloadVisualize
BU of 8yb6 by Molmil
Type I-EHNH Cascade complex
Descriptor: 61-nt crRNA, CRISPR system Cascade subunit CasC, CRISPR system Cascade subunit CasD, ...
Authors:Li, Z.
Deposit date:2024-02-11
Release date:2024-07-31
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Mechanisms for HNH-mediated target DNA cleavage in type I CRISPR-Cas systems.
Mol.Cell, 84, 2024
8VZ8
DownloadVisualize
BU of 8vz8 by Molmil
Crystal structure of mouse MAIT M2B TCR-MR1-5-OP-RU complex
Descriptor: 1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, Beta-2-microglobulin, GLYCEROL, ...
Authors:Ciacchi, L, Rossjohn, J, Awad, W.
Deposit date:2024-02-11
Release date:2024-04-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Mouse mucosal-associated invariant T cell receptor recognition of MR1 presenting the vitamin B metabolite, 5-(2-oxopropylideneamino)-6-d-ribitylaminouracil.
J.Biol.Chem., 300, 2024
8VZ9
DownloadVisualize
BU of 8vz9 by Molmil
Crystal structure of mouse MAIT M2A TCR-MR1-5-OP-RU complex
Descriptor: 1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, Beta-2-microglobulin, GLYCEROL, ...
Authors:Ciacchi, L, Rossjohn, J, Awad, W.
Deposit date:2024-02-11
Release date:2024-04-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Mouse mucosal-associated invariant T cell receptor recognition of MR1 presenting the vitamin B metabolite, 5-(2-oxopropylideneamino)-6-d-ribitylaminouracil.
J.Biol.Chem., 300, 2024
8VZM
DownloadVisualize
BU of 8vzm by Molmil
DNA Ligase 1 captured with pre-step 3 ligation at the rA:T nicksite
Descriptor: ADENOSINE MONOPHOSPHATE, DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3'), ...
Authors:KanalElamparithi, B, Gulkis, M, Caglayan, M.
Deposit date:2024-02-11
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structures of LIG1 provide a mechanistic basis for understanding a lack of sugar discrimination against a ribonucleotide at the 3'-end of nick DNA.
J.Biol.Chem., 300, 2024
8VZL
DownloadVisualize
BU of 8vzl by Molmil
DNA Ligase 1 captured with pre-step 3 ligation at the rG:C nicksite
Descriptor: ADENOSINE MONOPHOSPHATE, DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3'), ...
Authors:KanalElamparithi, B, Gulkis, M, Caglayan, M.
Deposit date:2024-02-11
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Structures of LIG1 provide a mechanistic basis for understanding a lack of sugar discrimination against a ribonucleotide at the 3'-end of nick DNA.
J.Biol.Chem., 300, 2024
8YAX
DownloadVisualize
BU of 8yax by Molmil
SARS-CoV-2 DMV nsp3-4 pore complex (full-pore)
Descriptor: Non-structural protein 4, Papain-like protease nsp3
Authors:Huang, Y.X, Zhong, L.J, Zhang, W.X, Ni, T.
Deposit date:2024-02-10
Release date:2024-06-19
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Molecular architecture of coronavirus double-membrane vesicle pore complex.
Nature, 633, 2024
8RYT
DownloadVisualize
BU of 8ryt by Molmil
Structural characterization of Thogoto Virus nucleoprotein provides insights into RNA encapsidation and assembly
Descriptor: Nucleoprotein
Authors:Roske, Y, Mikirtumov, V, Daumke, O, Kudryashev, M, Dick, A.
Deposit date:2024-02-09
Release date:2024-06-19
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Structural characterization of Thogoto Virus nucleoprotein provides insights into viral RNA encapsidation and RNP assembly.
Structure, 32, 2024
8RYN
DownloadVisualize
BU of 8ryn by Molmil
Structure of S2 TCR in complex with HLA-A*11:01 bound to ELFSYLIEK peptide
Descriptor: Beta-2-microglobulin, ELFSYLIEK peptide, MHC class I antigen, ...
Authors:Karuppiah, V.
Deposit date:2024-02-09
Release date:2024-09-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure of S2 TCR in complex with HLA-A*11:01 bound to ELFSYLIEK peptide
To Be Published
8RYQ
DownloadVisualize
BU of 8ryq by Molmil
Structure of S8-9F3 TCR in complex with HLA-A*11:01 bound to ELFSYLIEK peptide
Descriptor: Beta-2-microglobulin, ELFSYLIEK peptide, MHC class I antigen, ...
Authors:Karuppiah, V.
Deposit date:2024-02-09
Release date:2024-09-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of S8-9F3 TCR in complex with HLA-A*11:01 bound to ELFSYLIEK peptide
To Be Published
8RYM
DownloadVisualize
BU of 8rym by Molmil
Structure of S2 TCR in complex with HLA-A*03:01 bound to ELFSYLIEK peptide
Descriptor: Beta-2-microglobulin, ELFSYLIEK peptide, HLA class I histocompatibility antigen, ...
Authors:Karuppiah, V.
Deposit date:2024-02-09
Release date:2024-09-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structure of S2 TCR in complex with HLA-A*03:01 bound to ELFSYLIEK peptide
To Be Published
8RYO
DownloadVisualize
BU of 8ryo by Molmil
Structure of S2-198 TCR in complex with HLA-A*03:01 bound to ELFSYLIEK peptide
Descriptor: 1,2-ETHANEDIOL, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, Beta-2-microglobulin, ...
Authors:Karuppiah, V.
Deposit date:2024-02-09
Release date:2024-09-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of S2-198 TCR in complex with HLA-A*03:01 bound to ELFSYLIEK peptide
To Be Published
8RYP
DownloadVisualize
BU of 8ryp by Molmil
Structure of S8 TCR in complex with HLA-A*03:01 bound to ELFSYLIEK peptide
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, ELFSYLIEK peptide, ...
Authors:Karuppiah, V.
Deposit date:2024-02-09
Release date:2024-09-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure of S8 TCR in complex with HLA-A*03:01 bound to ELFSYLIEK peptide
To Be Published
8YAN
DownloadVisualize
BU of 8yan by Molmil
Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound
Descriptor: RNA (33-MER), ~{N},~{N}-dimethyl-2-[(1-methyl-9~{H}-pyrido[3,4-b]indol-7-yl)oxy]ethanamine
Authors:Numata, T, Schneekloth, J.S.
Deposit date:2024-02-09
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mechanistic Analysis of Riboswitch Ligand Interactions Provides Insights into Pharmacological Control over Gene Expression.
Biorxiv, 2024
8YAM
DownloadVisualize
BU of 8yam by Molmil
Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound
Descriptor: 2-[2-(dimethylamino)ethoxy]xanthen-9-one, RNA (33-MER)
Authors:Numata, T, Parmar, S, Schneekloth, J.S.
Deposit date:2024-02-09
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mechanistic Analysis of Riboswitch Ligand Interactions Provides Insights into Pharmacological Control over Gene Expression.
Biorxiv, 2024
8YAL
DownloadVisualize
BU of 8yal by Molmil
ATAT-2 bound K40Q MEC-12/MEC-7 microtubule
Descriptor: ACETYL COENZYME *A, Alpha-tubulin N-acetyltransferase 2, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Lam, W.H, Yu, D, Zhai, Y, Ti, S.
Deposit date:2024-02-09
Release date:2024-11-06
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Tubulin acetyltransferases access and modify the microtubule luminal K40 residue through anchors in taxane-binding pockets.
Nat.Struct.Mol.Biol., 2024
8RYS
DownloadVisualize
BU of 8rys by Molmil
Human IL-1beta, unliganded
Descriptor: Interleukin-1 beta, SULFATE ION
Authors:Rondeau, J.-M, Lehmann, S.
Deposit date:2024-02-09
Release date:2024-03-06
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Ligandability Assessment of IL-1 beta by Integrated Hit Identification Approaches.
J.Med.Chem., 67, 2024
8RYK
DownloadVisualize
BU of 8ryk by Molmil
IL-1beta in complex with macrocyclic peptide hit
Descriptor: Interleukin-1 beta, Macrocyclic peptide
Authors:Rondeau, J.-M, Lehmann, S.
Deposit date:2024-02-09
Release date:2024-05-22
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Ligandability Assessment of IL-1 beta by Integrated Hit Identification Approaches.
J.Med.Chem., 67, 2024
8YAJ
DownloadVisualize
BU of 8yaj by Molmil
ATAT-2 bound MEC-12/MEC-7 microtubule without acetyl-CoA
Descriptor: Alpha-tubulin N-acetyltransferase 2, GUANOSINE-5'-TRIPHOSPHATE, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
Authors:Lam, W.H, Yu, D, Zhai, Y, Ti, S.
Deposit date:2024-02-09
Release date:2024-11-06
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Tubulin acetyltransferases access and modify the microtubule luminal K40 residue through anchors in taxane-binding pockets.
Nat.Struct.Mol.Biol., 2024
8YAR
DownloadVisualize
BU of 8yar by Molmil
ATAT-2 bound K40R MEC-12/MEC-7 microtubule
Descriptor: ACETYL COENZYME *A, Alpha-tubulin N-acetyltransferase 2, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Lam, W.H, Yu, D, Zhai, Y, Ti, S.
Deposit date:2024-02-09
Release date:2024-11-06
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Tubulin acetyltransferases access and modify the microtubule luminal K40 residue through anchors in taxane-binding pockets.
Nat.Struct.Mol.Biol., 2024
8RXX
DownloadVisualize
BU of 8rxx by Molmil
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN
Descriptor: 40S ribosomal protein S12, 40S ribosomal protein S14, 40S ribosomal protein S19-like protein, ...
Authors:Rajan, K.S, Yonath, A.
Deposit date:2024-02-08
Release date:2024-05-15
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structural and mechanistic insights into the function of Leishmania ribosome lacking a single pseudouridine modification.
Cell Rep, 43, 2024
8VYL
DownloadVisualize
BU of 8vyl by Molmil
The structure of Human Hemoglobin in Complex with Nanobody BtNbE11
Descriptor: ACETYL GROUP, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Grinter, R, Binks, S, Fox, D.
Deposit date:2024-02-08
Release date:2024-07-17
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:The structure of a haemoglobin-nanobody complex reveals human beta-subunit-specific interactions.
Febs Lett., 598, 2024
8VYD
DownloadVisualize
BU of 8vyd by Molmil
A novel synthase generates m4(2)C to stabilize the archaeal ribosome
Descriptor: SAM-dependent methyltransferase, UPF0020 family, SODIUM ION
Authors:Ho, P.S, Santangelo, T.J, Fluke, K.
Deposit date:2024-02-08
Release date:2024-11-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A novel synthase generates m4(2)C to stabilize the archaeal ribosome
To Be Published
8YAA
DownloadVisualize
BU of 8yaa by Molmil
Cryo-EM structure of MIK2-SCOOP12-BAK1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, ...
Authors:Jia, F.S, Xiao, Y, Chai, J.J.
Deposit date:2024-02-08
Release date:2024-10-30
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Cryo-EM structure of MIK2-SCOOP12-BAK1
To Be Published

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon