Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7XX6
DownloadVisualize
BU of 7xx6 by Molmil
Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)
Descriptor: CALCIUM ION, DNA (169-MER), Histone H1.0, ...
Authors:Adhireksan, Z, Qiuye, B, Lee, P.L, Sharma, D, Padavattan, S, Davey, C.A.
Deposit date:2022-05-28
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.39 Å)
Cite:Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169a DNA fragment)
To Be Published
7XVL
DownloadVisualize
BU of 7xvl by Molmil
Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169an DNA fragment)
Descriptor: DNA (169-MER), Histone H1.0, Histone H2A type 1-B/E, ...
Authors:Adhireksan, Z, Qiuye, B, Lee, P.L, Sharma, D, Padavattan, S, Davey, C.A.
Deposit date:2022-05-24
Release date:2023-05-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.506 Å)
Cite:Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (sticky-169an DNA fragment)
To Be Published
2QUT
DownloadVisualize
BU of 2qut by Molmil
Dihydroxyacetone phosphate enamine intermediate in fructose-1,6-bisphosphate aldolase from rabbit muscle
Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase A
Authors:St-Jean, M, Sygusch, J.
Deposit date:2007-08-06
Release date:2007-08-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Stereospecific proton transfer by a mobile catalyst in mammalian fructose-1,6-bisphosphate aldolase
J.Biol.Chem., 282, 2007
2R0D
DownloadVisualize
BU of 2r0d by Molmil
Crystal Structure of Autoinhibited Form of Grp1 Arf GTPase Exchange Factor
Descriptor: Cytohesin-3, DI(HYDROXYETHYL)ETHER, INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE, ...
Authors:DiNitto, J.P, Delprato, A, Gabe Lee, M.T, Cronin, T.C, Huang, S, Guilherme, A, Czech, M.P, Lambright, D.G.
Deposit date:2007-08-18
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural Basis and Mechanism of Autoregulation in 3-Phosphoinositide-Dependent Grp1 Family Arf GTPase Exchange Factors.
Mol.Cell, 28, 2007
2R2O
DownloadVisualize
BU of 2r2o by Molmil
Crystal structure of the effector domain of human Plexin B1
Descriptor: Plexin-B1, UNKNOWN ATOM OR ION
Authors:Tong, Y, Tempel, W, Shen, L, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-08-27
Release date:2007-09-04
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of Rac1, Rnd1, and RhoD to a novel Rho GTPase interaction motif destabilizes dimerization of the plexin-B1 effector domain.
J.Biol.Chem., 282, 2007
4FWS
DownloadVisualize
BU of 4fws by Molmil
Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with CTP
Descriptor: 1,2-ETHANEDIOL, CYTIDINE-5'-TRIPHOSPHATE, Propionate kinase
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2012-07-01
Release date:2013-06-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): insights from kinetic and crystallographic studies.
Biochim.Biophys.Acta, 1834, 2013
4GK5
DownloadVisualize
BU of 4gk5 by Molmil
Crystal structure of human Rev3-Rev7-Rev1-Polkappa complex
Descriptor: DNA polymerase kappa, DNA polymerase zeta catalytic subunit, DNA repair protein REV1, ...
Authors:Tao, J, Min, X, Wei, X.
Deposit date:2012-08-10
Release date:2013-03-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Structural insights into the assembly of human translesion polymerase complexes
Protein Cell, 3, 2012
6S6D
DownloadVisualize
BU of 6s6d by Molmil
Crystal structure of RagA-Q66L-GTP/RagC-S75N-GDP GTPase heterodimer complex
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Anandapadamanaban, M, Masson, G.R, Perisic, O, Kaufman, J, Williams, R.L.
Deposit date:2019-07-02
Release date:2019-10-16
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Architecture of human Rag GTPase heterodimers and their complex with mTORC1.
Science, 366, 2019
5YK5
DownloadVisualize
BU of 5yk5 by Molmil
structure of the human Lamtor4-Lamtor5 complex
Descriptor: Ragulator complex protein LAMTOR4, Ragulator complex protein LAMTOR5
Authors:Wu, G, Mu, Z.
Deposit date:2017-10-12
Release date:2018-12-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural insight into the Ragulator complex which anchors mTORC1 to the lysosomal membrane
Cell Discov, 3, 2017
1R8Q
DownloadVisualize
BU of 1r8q by Molmil
FULL-LENGTH ARF1-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN
Descriptor: 1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE, ADP-ribosylation factor 1, Arno, ...
Authors:Renault, L, Guibert, B, Cherfils, J.
Deposit date:2003-10-28
Release date:2004-01-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural snapshots of the mechanism and inhibition of a guanine nucleotide exchange factor
Nature, 426, 2003
6SLO
DownloadVisualize
BU of 6slo by Molmil
Crystal structure of PUF60 UHM domain in complex with 7,8 dimethoxyperphenazine
Descriptor: 2-[4-[3-(8-chloranyl-2,3-dimethoxy-phenothiazin-10-yl)propyl]piperazin-1-yl]ethanol, MAGNESIUM ION, Thioredoxin,Poly(U)-binding-splicing factor PUF60
Authors:Jagtap, P.K.A, Kubelka, T, Bach, T, Sattler, M.
Deposit date:2019-08-20
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Identification of phenothiazine derivatives as UHM-binding inhibitors of early spliceosome assembly.
Nat Commun, 11, 2020
1SJ8
DownloadVisualize
BU of 1sj8 by Molmil
Solution Structure of the R1R2 Domains of Talin
Descriptor: Talin 1
Authors:Papagrigoriou, E, Gingras, A.R, Barsukov, I.L, Critchley, D.R, Emsley, J.
Deposit date:2004-03-03
Release date:2004-08-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Activation of a vinculin-binding site in the talin rod involves rearrangement of a five-helix bundle
EMBO J., 23, 2004
1SPK
DownloadVisualize
BU of 1spk by Molmil
Solution Structure of RSGI RUH-010, an SH3 Domain from Mouse cDNA
Descriptor: RIKEN cDNA 1300006M19
Authors:Suzuki, Y, Abe, T, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-17
Release date:2004-09-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-010, an SH3 Domain from Mouse cDNA
To be Published
6R7F
DownloadVisualize
BU of 6r7f by Molmil
Structural basis of Cullin-2 RING E3 ligase regulation by the COP9 signalosome
Descriptor: COP9 signalosome complex subunit 1, COP9 signalosome complex subunit 2, COP9 signalosome complex subunit 3, ...
Authors:Faull, S.V, Lau, A.M.C, Martens, C, Ahdash, Z, Yebenes, H, Schmidt, C, Beuron, F, Cronin, N.B, Morris, E.P, Politis, A.
Deposit date:2019-03-28
Release date:2019-08-28
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome.
Nat Commun, 10, 2019
5YXJ
DownloadVisualize
BU of 5yxj by Molmil
FXR ligand binding domain
Descriptor: 2-[benzyl(methyl)amino]ethyl methyl 2,6-dimethyl-4-(3-nitrophenyl)pyridine-3,5-dicarboxylate, Bile acid receptor, Peptide from Nuclear receptor coactivator 2
Authors:Yi, L, Yong, L.
Deposit date:2017-12-05
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:A ligand of drug binding to FXR
To Be Published
2SDF
DownloadVisualize
BU of 2sdf by Molmil
SOLUTION NMR STRUCTURE OF STROMAL CELL-DERIVED FACTOR-1 (SDF-1), 30 STRUCTURES
Descriptor: STROMAL CELL-DERIVED FACTOR-1
Authors:Crump, M.P, Rajarathnam, K, Clark-Lewis, I, Sykes, B.D.
Deposit date:1998-03-07
Release date:1998-06-17
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure and basis for functional activity of stromal cell-derived factor-1; dissociation of CXCR4 activation from binding and inhibition of HIV-1.
EMBO J., 16, 1997
5IZW
DownloadVisualize
BU of 5izw by Molmil
Crystal structure of RNA editing specific factor of designer PLS-type PPR-9R protein
Descriptor: PLS9-PPR
Authors:Yan, J, Zhang, Q, Guan, Z, Zou, T, Yin, P.
Deposit date:2016-03-26
Release date:2017-03-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.738 Å)
Cite:MORF9 increases the RNA-binding activity of PLS-type pentatricopeptide repeat protein in plastid RNA editing
Nat Plants, 3, 2017
6S6A
DownloadVisualize
BU of 6s6a by Molmil
Crystal structure of RagA-Q66L/RagC-T90N GTPase heterodimer complex
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Anandapadamanaban, M, Masson, G.R, Perisic, O, Kaufman, J, Williams, R.L.
Deposit date:2019-07-02
Release date:2019-10-16
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Architecture of human Rag GTPase heterodimers and their complex with mTORC1.
Science, 366, 2019
4FWK
DownloadVisualize
BU of 4fwk by Molmil
Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with AMP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, Propionate kinase
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2012-07-01
Release date:2013-06-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): insights from kinetic and crystallographic studies.
Biochim.Biophys.Acta, 1834, 2013
4FWQ
DownloadVisualize
BU of 4fwq by Molmil
Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with GTP
Descriptor: 1,2-ETHANEDIOL, GUANOSINE-5'-TRIPHOSPHATE, Propionate kinase
Authors:Chittori, S, Savithri, H.S, Murthy, M.R.N.
Deposit date:2012-07-01
Release date:2013-06-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): insights from kinetic and crystallographic studies.
Biochim.Biophys.Acta, 1834, 2013
1R6E
DownloadVisualize
BU of 1r6e by Molmil
Solution structure of the catalytic domain of SopE2
Descriptor: TypeIII-secreted protein effector: invasion-associated protein
Authors:Williams, C, Galyov, E.E, Bagby, S.
Deposit date:2003-10-15
Release date:2004-09-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure, Backbone Dynamics, and Interaction with Cdc42 of Salmonella Guanine Nucleotide Exchange Factor SopE2
Biochemistry, 43, 2004
1RE0
DownloadVisualize
BU of 1re0 by Molmil
Structure of ARF1-GDP bound to Sec7 domain complexed with Brefeldin A
Descriptor: 1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE, ADP-ribosylation factor 1, ARF guanine-nucleotide exchange factor 1, ...
Authors:Goldberg, J, Mossessova, E.
Deposit date:2003-11-06
Release date:2003-12-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of ARF1*Sec7 complexed with Brefeldin A and its implications for the guanine nucleotide exchange mechanism.
Mol.Cell, 12, 2003
1RLP
DownloadVisualize
BU of 1rlp by Molmil
TWO BINDING ORIENTATIONS FOR PEPTIDES TO SRC SH3 DOMAIN: DEVELOPMENT OF A GENERAL MODEL FOR SH3-LIGAND INTERACTIONS
Descriptor: C-SRC TYROSINE KINASE SH3 DOMAIN, PROLINE-RICH LIGAND RLP2 (RALPPLPRY)
Authors:Feng, S, Chen, J.K, Yu, H, Simon, J.A, Schreiber, S.L.
Deposit date:1994-10-10
Release date:1995-02-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Two binding orientations for peptides to the Src SH3 domain: development of a general model for SH3-ligand interactions.
Science, 266, 1994
4EIK
DownloadVisualize
BU of 4eik by Molmil
Crystal Structure of the Human Fyn SH3 domain in complex with the synthetic peptide VSL12
Descriptor: SODIUM ION, Tyrosine-protein kinase Fyn, VSL12 peptide
Authors:Camara-Artigas, A.
Deposit date:2012-04-05
Release date:2013-04-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallization of and selenomethionine phasing strategy for a SETMAR-DNA complex.
Acta Crystallogr F Struct Biol Commun, 72, 2016
1RGP
DownloadVisualize
BU of 1rgp by Molmil
GTPASE-ACTIVATION DOMAIN FROM RHOGAP
Descriptor: RHOGAP
Authors:Barrett, T, Xiao, B, Dodson, E.J, Dodson, G, Ludbrook, S.B, Nurmahomed, K, Gamblin, S.J, Musacchio, A, Smerdon, S.J, Eccleston, J.F.
Deposit date:1996-12-05
Release date:1997-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of the GTPase-activating domain from p50rhoGAP.
Nature, 385, 1997

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon