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6SRF
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BU of 6srf by Molmil
Crystal Structure of Human Prolidase G278N variant expressed in the presence of chaperones
Descriptor: GLYCEROL, GLYCINE, MANGANESE (II) ION, ...
Authors:Wator, E, Wilk, P.
Deposit date:2019-09-05
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.847 Å)
Cite:Co-expression with chaperones can affect protein 3D structure as exemplified by loss-of-function variants of human prolidase.
Febs Lett., 594, 2020
5TYF
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BU of 5tyf by Molmil
DNA Polymerase Mu Product Complex, 10 mM Mg2+ (270 min)
Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Jamsen, J.A, Wilson, S.H.
Deposit date:2016-11-19
Release date:2017-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.971 Å)
Cite:Time-lapse crystallography snapshots of a double-strand break repair polymerase in action.
Nat Commun, 8, 2017
7S3A
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BU of 7s3a by Molmil
Crystal structure of intact U2AF65 RRM-region bound to AdML-C5 oligonucleotide
Descriptor: DNA/RNA (5'-R(P*UP*UP*(UD)P*CP*U)-D(P*(BRU))-R(P*CP*C)-3'), SODIUM ION, Splicing factor U2AF 65 kDa subunit
Authors:Jenkins, J.L, Henderson, S, Kielkopf, C.L.
Deposit date:2021-09-05
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal.
Nucleic Acids Res., 50, 2022
7SJQ
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BU of 7sjq by Molmil
Ex silico engineering of cystine-dense peptides yielding a potent bispecific T-cell engager
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cystine-dense peptide, GLYCEROL, ...
Authors:Rupert, P.B, Strong, R.
Deposit date:2021-10-18
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ex silico engineering of cystine-dense peptides yielding a potent bispecific T cell engager.
Sci Transl Med, 14, 2022
5UCK
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BU of 5uck by Molmil
Class II fructose-1,6-bisphosphate aldolase of Helicobacter pylori with cleavage products
Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase, GLYCERALDEHYDE-3-PHOSPHATE, ...
Authors:Jacques, B, Sygusch, J.
Deposit date:2016-12-22
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.782 Å)
Cite:Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases.
J. Biol. Chem., 293, 2018
6G2X
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BU of 6g2x by Molmil
Crystal structure of the p97 D2 domain in a helical split-washer conformation
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, ...
Authors:Stach, L, Morgan, R.M.L, Freemont, P.S.
Deposit date:2018-03-23
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.078 Å)
Cite:Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split-washer-type mechanism for substrate unfolding.
Febs Lett., 594, 2020
7S2V
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BU of 7s2v by Molmil
Crystal structure of hen egg white lysozyme
Descriptor: Lysozyme C, SODIUM ION
Authors:Lima, L.M.T.R, Ramos, N.G.
Deposit date:2021-09-03
Release date:2022-09-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The reproducible normality of the crystallographic B-factor.
Anal.Biochem., 645, 2022
7RVI
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BU of 7rvi by Molmil
Segment from naked mole rat (elk T174S) prion protein 168-176 QYNNQNSFV
Descriptor: CACODYLATE ION, Major prion protein, SODIUM ION
Authors:Glynn, C, Rodriguez, J.A, Hernandez, E.
Deposit date:2021-08-18
Release date:2022-08-24
Last modified:2024-05-22
Method:ELECTRON CRYSTALLOGRAPHY (1.05 Å)
Cite:Structural and Biophysical Consequences of Sequence Variation in the B2a2 Loop of Mammalian Prions
To be published
6GAQ
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BU of 6gaq by Molmil
Crystal structure of oxidised Flavodoxin 2 from Bacillus cereus
Descriptor: CALCIUM ION, FLAVIN MONONUCLEOTIDE, Flavodoxin, ...
Authors:Lofstad, M, Gudim, I, Hersleth, H.-P.
Deposit date:2018-04-12
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Characterization of Different Flavodoxin Reductase-Flavodoxin (FNR-Fld) Interactions Reveals an Efficient FNR-Fld Redox Pair and Identifies a Novel FNR Subclass.
Biochemistry, 57, 2018
6SJ8
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BU of 6sj8 by Molmil
Methyltransferase MtgA from Desulfitobacterium hafniense in complex with tetrahydrofolate
Descriptor: (6S)-2-amino-6-methyl-5,6,7,8-tetrahydropteridin-4(3H)-one, GLYCEROL, SODIUM ION, ...
Authors:Badmann, T, Groll, M.
Deposit date:2019-08-13
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structures in Tetrahydrofolate Methylation in Desulfitobacterial Glycine Betaine Metabolism at Atomic Resolution.
Chembiochem, 21, 2020
6G30
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BU of 6g30 by Molmil
Crystal structure of the p97 D2 domain in a helical split-washer conformation
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, ...
Authors:Stach, L, Morgan, R.M.L, Freemont, P.S.
Deposit date:2018-03-23
Release date:2019-04-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.418 Å)
Cite:Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split-washer-type mechanism for substrate unfolding.
Febs Lett., 594, 2020
6SUY
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BU of 6suy by Molmil
Yeast cytochrome c in complex with an octa-anionic calix[4]arene
Descriptor: Cytochrome c iso-1, HEME C, SODIUM ION, ...
Authors:Alex, J.M, Crowley, P.B.
Deposit date:2019-09-17
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Probing the determinants of porosity in protein frameworks: co-crystals of cytochrome c and an octa-anionic calix[4]arene.
Org.Biomol.Chem., 18, 2020
7SA2
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BU of 7sa2 by Molmil
SARS-CoV-2 spike-derived peptide S1060-1068 (VVFLHVTYV) presented by HLA-A*02:01
Descriptor: Beta-2-microglobulin, CADMIUM ION, MHC class I antigen, ...
Authors:Szeto, C, Gras, S.
Deposit date:2021-09-21
Release date:2022-09-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:SARS-CoV-2 spike-derived peptide S1060-1068 (VVFLHVTYV) presented by HLA-A*02:01
To Be Published
7S4E
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BU of 7s4e by Molmil
Crystal Structure of ligand ACBi1 in complex with bromodomain of human Smarca2 and pVHL:ElonginC:ElonginB complex
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Elongin-B, ...
Authors:MacPherson, D.J, Sherman, W.
Deposit date:2021-09-08
Release date:2022-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry.
Nat Commun, 13, 2022
5U1Z
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BU of 5u1z by Molmil
X-ray structure of the WlarG aminotransferase, apo form, from Campylobacter jejune
Descriptor: CHLORIDE ION, Putative aminotransferase, SODIUM ION
Authors:Holden, H.M, Thoden, J.B, Dow, G.T, Gilbert, M.
Deposit date:2016-11-29
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase.
Protein Sci., 26, 2017
7SGJ
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BU of 7sgj by Molmil
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with DKFZ-711
Descriptor: 1,2-ETHANEDIOL, 4-[(3-anilino-3-oxopropyl)(methyl)amino]-N-hydroxybutanamide, DI(HYDROXYETHYL)ETHER, ...
Authors:Herbst-Gervasoni, C.J, Christianson, D.W.
Deposit date:2021-10-05
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Aza-SAHA Derivatives Are Selective Histone Deacetylase 10 Chemical Probes That Inhibit Polyamine Deacetylation and Phenocopy HDAC10 Knockout.
J.Am.Chem.Soc., 144, 2022
5U9J
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BU of 5u9j by Molmil
Crystal structure of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) complexed with geranyl geranyl pyrophoshate
Descriptor: Aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1), GERAN-8-YL GERAN, ISOPROPYL ALCOHOL, ...
Authors:Yadav, R.P, Gakhar, L, Liping, Y, Artemyev, N.O.
Deposit date:2016-12-16
Release date:2017-07-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unique structural features of the AIPL1-FKBP domain that support prenyl lipid binding and underlie protein malfunction in blindness.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7SMZ
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BU of 7smz by Molmil
X-ray crystal structure of CYP142A3 from Mycobacterium Marinum in complex with 4-cholesten-3-one
Descriptor: (8ALPHA,9BETA)-CHOLEST-4-EN-3-ONE, ACETATE ION, Cytochrome P450 142A3, ...
Authors:Ghith, A, Bruning, J.B, Bell, S.G.
Deposit date:2021-10-27
Release date:2022-09-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The Structures of the Steroid Binding CYP142 Cytochrome P450 Enzymes from Mycobacterium ulcerans and Mycobacterium marinum.
Acs Infect Dis., 8, 2022
5UC6
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BU of 5uc6 by Molmil
Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that mimics IL-1RI Domain III
Descriptor: DNA (5'-D(*CP*G)-R(P*(85Y))-D(P*GP*AP*G)-R(P*(85Y)P*(85Y))-D(P*A)-R(P*(85Y))-D(P*GP*GP*G)-R(P*(85Y)P*(85Y))-D(P*AP*GP*AP*G)-R(P*(85Y))-D(P*CP*GP*(ATD))-3'), Interleukin-1 alpha, MAGNESIUM ION, ...
Authors:Ren, X, Pyle, A.
Deposit date:2016-12-21
Release date:2017-10-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for IL-1 alpha recognition by a modified DNA aptamer that specifically inhibits IL-1 alpha signaling.
Nat Commun, 8, 2017
7SH5
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BU of 7sh5 by Molmil
Crystal structure of CYP142A3 from Mycobacterium ulcerans bound to Cholest-4-en-3-one
Descriptor: (8ALPHA,9BETA)-CHOLEST-4-EN-3-ONE, ACETATE ION, Cytochrome P450 142A3, ...
Authors:Doherty, D.Z, Bell, S.G, Bruning, J.
Deposit date:2021-10-08
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:The Structures of the Steroid Binding CYP142 Cytochrome P450 Enzymes from Mycobacterium ulcerans and Mycobacterium marinum.
Acs Infect Dis., 8, 2022
5UD2
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BU of 5ud2 by Molmil
Class II fructose-1,6-bisphosphate aldolase H180Q variant of Helicobacter pylori with DHAP
Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase, SODIUM ION, ...
Authors:Jacques, B, Sygusch, J.
Deposit date:2016-12-23
Release date:2018-04-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.775 Å)
Cite:Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases.
J. Biol. Chem., 293, 2018
7SGI
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BU of 7sgi by Molmil
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with Inhibitor 14
Descriptor: 5-[(2-anilino-2-oxoethyl)(methyl)amino]-N-hydroxypentanamide, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Herbst-Gervasoni, C.J, Christianson, D.W.
Deposit date:2021-10-05
Release date:2022-10-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Aza-SAHA Derivatives Are Selective Histone Deacetylase 10 Chemical Probes That Inhibit Polyamine Deacetylation and Phenocopy HDAC10 Knockout.
J.Am.Chem.Soc., 144, 2022
7S2A
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BU of 7s2a by Molmil
Crystal structure of hen egg white lysozyme
Descriptor: Lysozyme C, SODIUM ION
Authors:Lima, L.M.T.R, Ramos, N.G, Ribeiro, F.S.
Deposit date:2021-09-03
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The reproducible normality of the crystallographic B-factor.
Anal.Biochem., 645, 2022
7S27
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BU of 7s27 by Molmil
Crystal structure of hen egg white lysozyme
Descriptor: Lysozyme C, SODIUM ION
Authors:Lima, L.M.T.R, Ramos, N.G, Ribeiro, F.S.
Deposit date:2021-09-03
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The reproducible normality of the crystallographic B-factor.
Anal.Biochem., 645, 2022
7S29
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BU of 7s29 by Molmil
Crystal structure of hen egg white lysozyme
Descriptor: Lysozyme C, SODIUM ION
Authors:Lima, L.M.T.R, Ramos, N.G, Ribeiro, F.S.
Deposit date:2021-09-03
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The reproducible normality of the crystallographic B-factor.
Anal.Biochem., 645, 2022

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PDB entries from 2024-08-07

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