PDB: 505 resultsInfo pagesStatus searchChemie searchBIRD

---

7L86	BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-1 from animal Rh.32034 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP MD39 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8E	BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-1 from animal Rh.33172 (Wk38 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-10-09 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L89	BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-4 from animal Rh.32034 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP MD39 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Rantalainen, K, Perrett, H.R, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8X	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-4 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Yang, Y.R, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (3 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8W	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-3 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L7U	BG505 SOSIP reconstructed from a designed nanoparticle, BG505 SOSIP-T33-31 (Component B) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2(7S) - gp120, ... Authors: Antanasijevic, A, Froes Rocha, R, Sewall, L.M, Ward, A.B. Deposit date: 2020-12-30 Release date: 2021-08-04 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8D	BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-4 from animal Rh.33104 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP MD39 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8Z	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-7 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Perrett, H.R, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2021-08-25 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L90	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-8 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L88	BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-3 from animal Rh.32034 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP MD39 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Cannac, F, Perrett, H.R, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8U	BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-2 from animal Rh.33311 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP.v5.2 N241/N289 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Rantalainen, K, Ward, A.B. Deposit date: 2021-01-01 Release date: 2021-08-04 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L87	BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-2 from animal Rh.32034 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP MD39 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Yang, Y.R, Perrett, H.R, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8B	BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-2 from animal Rh.33104 (Wk26 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP MD39 - gp120, ... Authors: Antanasijevic, A, Sewall, L.M, Yang, Y.R, Perrett, H.R, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8G	BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-3 from animal Rh.33172 (Wk38 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Antanasijevic, A, Sewall, L.M, Rantalainen, K, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2021-09-08 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7L8F	BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-2 from animal Rh.33172 (Wk38 time point) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Antanasijevic, A, Sewall, L.M, Ward, A.B. Deposit date: 2020-12-31 Release date: 2021-08-04 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.66 Å) Cite: Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nat Commun, 12, 2021
7LY9	Cryo-EM structure of 2909 Fab in complex with 3BNC117 Fab and CAP256.wk34.c80 SOSIP.RnS2 N160K HIV-1 Env trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2909 Heavy Chain, ... Authors: Gorman, J, Kwong, P.D. Deposit date: 2021-03-06 Release date: 2021-08-18 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.91 Å) Cite: Extended antibody-framework-to-antigen distance observed exclusively with broad HIV-1-neutralizing antibodies recognizing glycan-dense surfaces. Nat Commun, 12, 2021
7LG6	BG505 SOSIP.v5.2 in complex with VRC40.01 and RM19R Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Cottrell, C.A, Torres, J.L, Wu, N.R, Ward, A.B. Deposit date: 2021-01-19 Release date: 2021-09-15 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies. Cell Rep, 37, 2021
7N6W	Structure of uncleaved HIV-1 JR-FL Env glycoprotein trimer in state U2 bound to small Molecule HIV-1 Entry Inhibitor BMS-378806 Descriptor: 1-[(2R)-4-(benzenecarbonyl)-2-methylpiperazin-1-yl]-2-(4-methoxy-1H-pyrrolo[2,3-b]pyridin-3-yl)ethane-1,2-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhang, S, Wang, K, Mao, Y. Deposit date: 2021-06-09 Release date: 2021-09-22 Last modified: 2021-12-08 Method: ELECTRON MICROSCOPY (4.7 Å) Cite: Asymmetric Structures and Conformational Plasticity of the Uncleaved Full-Length Human Immunodeficiency Virus Envelope Glycoprotein Trimer. J.Virol., 95, 2021
7N6U	Structure of uncleaved HIV-1 JR-FL Env glycoprotein trimer in state U1 bound to small Molecule HIV-1 Entry Inhibitor BMS-378806 Descriptor: 1-[(2R)-4-(benzenecarbonyl)-2-methylpiperazin-1-yl]-2-(4-methoxy-1H-pyrrolo[2,3-b]pyridin-3-yl)ethane-1,2-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhang, S, Wang, K, Mao, Y. Deposit date: 2021-06-09 Release date: 2021-09-22 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Asymmetric Structures and Conformational Plasticity of the Uncleaved Full-Length Human Immunodeficiency Virus Envelope Glycoprotein Trimer. J.Virol., 95, 2021
7MXE	Ab1245 Fab in complex with BG505 SOSIP.664 and 8ANC195 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8ANC195 G52K5 Fab heavy chain, ... Authors: Abernathy, M.E, Bjorkman, P.J. Deposit date: 2021-05-19 Release date: 2021-10-27 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Antibody elicited by HIV-1 immunogen vaccination in macaques displaces Env fusion peptide and destroys a neutralizing epitope. Npj Vaccines, 6, 2021
7RAI	Cryo-EM structure of M4008_N1 Fab in complex with BG505 DS-SOSIP.664 Env trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Chan, K.-W, Kong, X.P. Deposit date: 2021-07-01 Release date: 2021-11-17 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: A site of vulnerability at V3 crown defined by HIV-1 bNAb M4008_N1. Nat Commun, 12, 2021
6X96	Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 10A fragment antigen binding variable domain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 HIV-1 Env gp120, ... Authors: Ozorowski, G, Cottrell, C.A, Ward, A.B. Deposit date: 2020-06-02 Release date: 2021-12-08 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Limited breadth of anti-HIV Env glycan hole antibodies is further hindered by strain-specific peptide interactions To Be Published
6X98	Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11B fragment antigen binding variable domain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 HIV-1 Env gp120, ... Authors: Ozorowski, G, Cottrell, C.A, Ward, A.B. Deposit date: 2020-06-02 Release date: 2021-12-08 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.38 Å) Cite: Limited breadth of anti-HIV Env glycan hole antibodies is further hindered by strain-specific peptide interactions To Be Published
6X97	Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11A fragment antigen binding variable domain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 HIV-1 Env gp120, ... Authors: Ozorowski, G, Cottrell, C.A, Ward, A.B. Deposit date: 2020-06-02 Release date: 2021-12-08 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.65 Å) Cite: Limited breadth of anti-HIV Env glycan hole antibodies is further hindered by strain-specific peptide interactions To Be Published
7T0O	cryoEM reconstruction of the HIV gp140 in complex with the extracellular domains of CD4 and the adnectin domain of Combinectin. The gp140 and CD4 coordinates from entry 6EDU were rigid body fitted to the EM map along withe the crystal structure of CD4+adnectin Descriptor: Adnectin, BG505 SOSIP.664 gp140, T-cell surface glycoprotein CD4 Authors: Concha, N.O, William, S.P, Wenzel, D.L. Deposit date: 2021-11-30 Release date: 2022-01-12 Method: ELECTRON MICROSCOPY (8.7 Å) Cite: Novel Bent Conformation of CD4 Induced by HIV-1 Inhibitor Indirectly Prevents Productive Viral Attachment. J.Mol.Biol., 434, 2021

<789101112131415161718192021>