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1VQ6
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BU of 1vq6 by Molmil
The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui
Descriptor: 23S ribosomal rna, 5'-R(*CP*(5AA)*(HFA))-3', 5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3', ...
Authors:Schmeing, T.M, Steitz, T.A.
Deposit date:2004-12-16
Release date:2005-11-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA.
Nature, 438, 2005
4GHI
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BU of 4ghi by Molmil
Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with a benzoxadiazole antagonist
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, N-(3-chloro-5-fluorophenyl)-4-nitro-2,1,3-benzoxadiazol-5-amine
Authors:Scheuermann, T.H, Key, J, Tambar, U.K, Bruick, R.K, Gardner, K.H.
Deposit date:2012-08-07
Release date:2013-02-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Allosteric inhibition of hypoxia inducible factor-2 with small molecules.
Nat.Chem.Biol., 9, 2013
1VQ5
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BU of 1vq5 by Molmil
The structure of the transition state analogue "RAA" bound to the large ribosomal subunit of haloarcula marismortui
Descriptor: 23S ribosomal rna, 5'-D(*(DC)P*(DC)P*(5AA)P*(2OP)P*(PO2)P*AP*C*C)-3'), 50S RIBOSOMAL PROTEIN L10E, ...
Authors:Schmeing, T.M, Steitz, T.A.
Deposit date:2004-12-16
Release date:2005-11-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.
Mol.Cell, 20, 2005
1VQ7
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BU of 1vq7 by Molmil
The structure of the transition state analogue "DCA" bound to the large ribosomal subunit of haloarcula marismortui
Descriptor: 23S ribosomal rna, 5'-R(*CP*CP*(5AA)P*(2OP)P*(PAE)P*AP*C*C)-3'), 50S RIBOSOMAL PROTEIN L10E, ...
Authors:Schmeing, T.M, Steitz, T.A.
Deposit date:2004-12-16
Release date:2005-11-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA.
Nature, 438, 2005
2YY0
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BU of 2yy0 by Molmil
Crystal Structure of MS0802, c-Myc-1 binding protein domain from Homo sapiens
Descriptor: C-Myc-binding protein
Authors:Xie, Y, Wang, H, Ihsanawati, K.T, Kishishita, S, Takemoto, C, Shirozu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2008-04-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:crystal structure of c-Myc-1 binding protein domain from Homo sapiens
To be Published
1HL3
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BU of 1hl3 by Molmil
CtBP/BARS in ternary complex with NAD(H) and PIDLSKK peptide
Descriptor: C-TERMINAL BINDING PROTEIN 3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PRO-ILE-ASP-LEU-SER-LYS-LYS PEPTIDE
Authors:Nardini, M, Spano, S, Cericola, C, Pesce, A, Massaro, A, Millo, E, Luini, A, Corda, D, Bolognesi, M.
Deposit date:2003-03-13
Release date:2003-06-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Ctbp/Bars: A Dual-Function Protein Involved in Transcription Co-Repression and Golgi Membrane Fission
Embo J., 22, 2003
1HK9
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BU of 1hk9 by Molmil
Crystal structure of the Hfq protein from Escherichia coli
Descriptor: PROTEIN HFQ
Authors:Sauter, C, Basquin, J, Suck, D.
Deposit date:2003-03-06
Release date:2003-07-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Sm-Like Proteins in Eubacteria: The Crystal Structure of the Hfq Protein from Escherichia Coli
Nucleic Acids Res., 31, 2003
2AKG
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BU of 2akg by Molmil
Thallium form of the G-Quadruplex from Oxytricha Nova, d(G4T4G4)2
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
Authors:Gill, M.L, Strobel, S.A, Loria, J.P.
Deposit date:2005-08-03
Release date:2005-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:(205)Tl NMR methods for the characterization of monovalent cation binding to nucleic acids
J.Am.Chem.Soc., 127, 2005
2YC0
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BU of 2yc0 by Molmil
FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH R-2-HYDROXYGLUTARATE
Descriptor: (2R)-2-hydroxypentanedioic acid, FE (II) ION, GLYCEROL, ...
Authors:Chowdhury, R, Clifton, I.J, Schofield, C.J.
Deposit date:2011-03-10
Release date:2011-03-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases.
EMBO Rep., 12, 2011
1WQ3
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BU of 1wq3 by Molmil
Escherichia coli tyrosyl-tRNA synthetase mutant complexed with 3-iodo-L-tyrosine
Descriptor: 3-IODO-TYROSINE, Tyrosyl-tRNA synthetase
Authors:Kobayashi, T, Sakamoto, K, Nureki, O, Takimura, T, Kamata, K, Sekine, R, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-09-20
Release date:2005-01-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion
Proc.Natl.Acad.Sci.USA, 102, 2005
1WRQ
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BU of 1wrq by Molmil
Crystal Structure of HutP-Antitermination complex
Descriptor: 5'-R(*UP*UP*UP*AP*GP*UP*U)-3', HISTIDINE, Hut operon positive regulatory protein, ...
Authors:Kumarevel, T, Mizuno, H, Kumar, P.K.R.
Deposit date:2004-10-25
Release date:2005-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the HutP-antitermination complex
To be published
1WM5
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BU of 1wm5 by Molmil
Crystal structure of the N-terminal TPR domain (1-203) of p67phox
Descriptor: Neutrophil cytosol factor 2, SULFATE ION
Authors:Inagaki, F, Suzuki, N.N.
Deposit date:2004-07-03
Release date:2005-10-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the N-terminal TPR domain (1-203) of p67phox
To be Published
7JMN
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BU of 7jmn by Molmil
Tail module of Mediator complex
Descriptor: MED15, Mediator of RNA polymerase II transcription subunit 14, Mediator of RNA polymerase II transcription subunit 16, ...
Authors:Zhang, H.Q, Chen, D.C.
Deposit date:2020-08-02
Release date:2021-03-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Mediator structure and conformation change.
Mol.Cell, 81, 2021
7K3J
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BU of 7k3j by Molmil
Crystal structure of dLC8 in complex with Panoramix TQT+TQ peptide
Descriptor: Dynein light chain 1, cytoplasmic, Protein panoramix, ...
Authors:Wang, J, Patel, D.J.
Deposit date:2020-09-11
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex.
Genes Dev., 35, 2021
7K3K
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BU of 7k3k by Molmil
Crystal structure of dLC8 in complex with Panoramix TQT peptide
Descriptor: Dynein light chain 1, cytoplasmic, Protein panoramix
Authors:Wang, J, Patel, D.J.
Deposit date:2020-09-11
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.415 Å)
Cite:Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex.
Genes Dev., 35, 2021
1GWQ
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BU of 1gwq by Molmil
HUMAN OESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN IN COMPLEX WITH RALOXIFENE CORE AND TIF2 NRBOX2 PEPTIDE
Descriptor: NUCLEAR RECEPTOR COACTIVATOR 2, OESTROGEN RECEPTOR, RALOXIFENE CORE
Authors:Pike, A.C.W, Brzozowski, A.M.
Deposit date:2002-03-22
Release date:2002-08-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Interaction of Transcriptional Intermediary Factor 2 Nuclear Receptor Box Peptides with the Coactivator Binding Site of Estrogen Receptor Alpha.
J.Biol.Chem., 277, 2002
7K3L
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BU of 7k3l by Molmil
Crystal structure of dLC8 in complex with Panoramix TQ peptide
Descriptor: 1,2-ETHANEDIOL, Dynein light chain 1, cytoplasmic, ...
Authors:Wang, J, Patel, D.J.
Deposit date:2020-09-11
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex.
Genes Dev., 35, 2021
1WPT
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BU of 1wpt by Molmil
Crystal Structure of HutP, an RNA binding anti-termination protein
Descriptor: Hut operon positive regulatory protein
Authors:Kumarevel, T, Mizuno, H, Kumar, P.K.R.
Deposit date:2004-09-13
Release date:2005-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis
Nucleic Acids Res., 33, 2005
1H3I
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BU of 1h3i by Molmil
Crystal structure of the Histone Methyltransferase SET7/9
Descriptor: HISTONE H3 LYSINE 4 SPECIFIC METHYLTRANSFERASE, MAGNESIUM ION
Authors:Wilson, J.R, Jing, C, Walker, P.A, Martin, S.R, Howell, S.A, Blackburn, G.M, Gamblin, S.J, Xiao, B.
Deposit date:2002-09-04
Release date:2002-11-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure and Functional Analysis of the Histone Methyltransferase Set7/9
Cell(Cambridge,Mass.), 111, 2002
1X0S
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BU of 1x0s by Molmil
Crystal structure of the 13-cis isomer of bacteriorhodopsin
Descriptor: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ...
Authors:Nishikawa, T, Murakami, M, Kouyama, T.
Deposit date:2005-03-28
Release date:2005-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the 13-cis isomer of bacteriorhodopsin in the dark-adapted state.
J.Mol.Biol., 352, 2005
2XD0
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BU of 2xd0 by Molmil
A processed non-coding RNA regulates a bacterial antiviral system
Descriptor: TOXI, TOXN
Authors:Blower, T.R, Pei, X.Y, Short, F.L, Fineran, P.C, Humphreys, D.P, Luisi, B.F, Salmond, G.P.C.
Deposit date:2010-04-28
Release date:2011-01-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:A processed noncoding RNA regulates an altruistic bacterial antiviral system.
Nat. Struct. Mol. Biol., 18, 2011
7JRI
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BU of 7jri by Molmil
High-resolution Crystal Structures of Transient Intermediates in the Phytochrome Photocycle, 33 ms structure
Descriptor: 3-[2-[[5-[[(3E,4S)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP
Authors:Schmidt, M, Stojkovic, E.
Deposit date:2020-08-12
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:High-resolution crystal structures of transient intermediates in the phytochrome photocycle.
Structure, 29, 2021
7K5J
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BU of 7k5j by Molmil
Structure of an E1-E2-ubiquitin thioester mimetic
Descriptor: ADENOSINE MONOPHOSPHATE, Ubiquitin, Ubiquitin-activating enzyme E1 1, ...
Authors:Yuan, L, Lv, Z, Olsen, S.K.
Deposit date:2020-09-16
Release date:2021-04-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:Crystal structures of an E1-E2-ubiquitin thioester mimetic reveal molecular mechanisms of transthioesterification.
Nat Commun, 12, 2021
8U77
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BU of 8u77 by Molmil
Crystal structure of Taf14 in complex with Yng1
Descriptor: Protein YNG1, Transcription initiation factor TFIID subunit 14
Authors:Nguyen, M.C, Wei, P.C, Zhang, G.Y, Kutateladze, T.G.
Deposit date:2023-09-14
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Molecular insight into interactions between the Taf14, Yng1 and Sas3 subunits of the NuA3 complex.
Nat Commun, 15, 2024
6B1C
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BU of 6b1c by Molmil
Macrophage Migration Inhibitory Factor in complex with a Naphthyridinone Inhibitor (4a)
Descriptor: 2-[1-(3-fluoro-4-hydroxyphenyl)-1H-1,2,3-triazol-4-yl]-7-methyl-1,7-naphthyridin-8(7H)-one, Macrophage migration inhibitory factor, SULFATE ION
Authors:Krimmer, S.G, Robertson, M.J, Jorgensen, W.L.
Deposit date:2017-09-18
Release date:2018-01-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.163 Å)
Cite:Adding a Hydrogen Bond May Not Help: Naphthyridinone vs Quinoline Inhibitors of Macrophage Migration Inhibitory Factor.
ACS Med Chem Lett, 8, 2017

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PDB entries from 2024-09-11

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