Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8W59
DownloadVisualize
BU of 8w59 by Molmil
Crystal structure of the RING domain of human XIAP treated with arsenic trioxide
Descriptor: CALCIUM ION, E3 ubiquitin-protein ligase XIAP, ZINC ION
Authors:Zhang, Q, Sun, H, Hu, X, Wang, M.
Deposit date:2023-08-25
Release date:2023-09-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.339 Å)
Cite:Crystal structure of the RING domain of human XIAP
To Be Published
2FOF
DownloadVisualize
BU of 2fof by Molmil
Structure of porcine pancreatic elastase in 80% isopropanol
Descriptor: CALCIUM ION, ISOPROPYL ALCOHOL, SULFATE ION, ...
Authors:Mattos, C, Bellamacina, C.R, Peisach, E, Pereira, A, Vitkup, D, Petsko, G.A, Ringe, D.
Deposit date:2006-01-13
Release date:2006-04-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Multiple solvent crystal structures: Probing binding sites, plasticity and hydration
J.Mol.Biol., 357, 2006
6ZSG
DownloadVisualize
BU of 6zsg by Molmil
Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA
Descriptor: 12S mitochondrial rRNA, 16S mitochondrial rRNA, 28S ribosomal protein S10, ...
Authors:Aibara, S, Singh, V, Modelska, A, Amunts, A.
Deposit date:2020-07-15
Release date:2020-10-14
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of mitochondrial translation.
Elife, 9, 2020
6ZSA
DownloadVisualize
BU of 6zsa by Molmil
Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA
Descriptor: 12S mitochondrial rRNA, 16S mitochondrial rRNA, 28S ribosomal protein S10, ...
Authors:Aibara, S, Singh, V, Modelska, A, Amunts, A.
Deposit date:2020-07-15
Release date:2020-10-21
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of mitochondrial translation.
Elife, 9, 2020
1ADG
DownloadVisualize
BU of 1adg by Molmil
CRYSTALLOGRAPHIC STUDIES OF TWO ALCOHOL DEHYDROGENASE-BOUND ANALOGS OF THIAZOLE-4-CARBOXAMIDE ADENINE DINUCLEOTIDE (TAD), THE ACTIVE ANABOLITE OF THE ANTITUMOR AGENT TIAZOFURIN
Descriptor: ALCOHOL DEHYDROGENASE, BETA-METHYLENE-SELENAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE, ZINC ION
Authors:Li, H, Hallows, W.A, Punzi, J.S, Marquez, V.E, Carrell, H.L, Pankiewicz, K.W, Watanabe, K.A, Goldstein, B.M.
Deposit date:1993-10-18
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystallographic studies of two alcohol dehydrogenase-bound analogues of thiazole-4-carboxamide adenine dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin.
Biochemistry, 33, 1994
7MDO
DownloadVisualize
BU of 7mdo by Molmil
Structure of human p97 ATPase L464P mutant
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase
Authors:Zhang, X, Gui, L, Li, S, Nandi, P, Columbres, R.C, Wong, D.E, Moen, D.R, Lin, H.J, Chiu, P.-L, Chou, T.-F.
Deposit date:2021-04-05
Release date:2021-08-25
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Conserved L464 in p97 D1-D2 linker is critical for p97 cofactor regulated ATPase activity.
Biochem.J., 478, 2021
7MDM
DownloadVisualize
BU of 7mdm by Molmil
Structure of human p97 ATPase L464P mutant
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase
Authors:Zhang, X, Gui, L, Li, S, Nandi, P, Columbres, R.C, Wong, D.E, Moen, D.R, Lin, H.J, Chiu, P.-L, Chou, T.-F.
Deposit date:2021-04-05
Release date:2021-08-25
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (4.86 Å)
Cite:Conserved L464 in p97 D1-D2 linker is critical for p97 cofactor regulated ATPase activity.
Biochem.J., 478, 2021
8JWJ
DownloadVisualize
BU of 8jwj by Molmil
PHD Finger Protein 7 (PHF7) in complex with UBE2D2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, PHD finger protein 7, ...
Authors:Lee, H.S, Bang, I, Choi, H.-J.
Deposit date:2023-06-29
Release date:2023-12-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Molecular basis for PHF7-mediated ubiquitination of histone H3.
Genes Dev., 37, 2023
8JWU
DownloadVisualize
BU of 8jwu by Molmil
PHD Finger Protein 7 (PHF7) fused to UBE2D2 via a (GSGG)3 linker
Descriptor: PHD finger protein 7,Ubiquitin-conjugating enzyme E2 D2, ZINC ION
Authors:Lee, H.S, Bang, I, Choi, H.-J.
Deposit date:2023-06-29
Release date:2023-12-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.58 Å)
Cite:Molecular basis for PHF7-mediated ubiquitination of histone H3.
Genes Dev., 37, 2023
7DFQ
DownloadVisualize
BU of 7dfq by Molmil
Crystal Structure of a novel 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase from Fusarium oxysporum 12S, ligand-free form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase
Authors:Kondo, T, Arakawa, T, Fushinobu, S, Sakamoto, T.
Deposit date:2020-11-09
Release date:2021-03-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Biochemical and structural characterization of a novel 4-O-alpha-l-rhamnosyl-beta-d-glucuronidase from Fusarium oxysporum.
Febs J., 288, 2021
1A48
DownloadVisualize
BU of 1a48 by Molmil
SAICAR SYNTHASE
Descriptor: PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE, SULFATE ION
Authors:Levdikov, V.M, Melik-Adamyan, W.R, Lamzin, V.S, Wilson, K.S.
Deposit date:1998-02-12
Release date:1999-03-30
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of SAICAR synthase: an enzyme in the de novo pathway of purine nucleotide biosynthesis.
Structure, 6, 1998
3HK1
DownloadVisualize
BU of 3hk1 by Molmil
Identification and Characterization of a Small Molecule Inhibitor of Fatty Acid Binding Proteins
Descriptor: 4-{[2-(methoxycarbonyl)-5-(2-thienyl)-3-thienyl]amino}-4-oxo-2-butenoic acid, Fatty acid-binding protein, adipocyte
Authors:Hertzel, A.V, Hellberg, K, Reynolds, J.M, Kruse, A.C, Juhlmann, B.E, Smith, A.J, Sanders, M.A, Ohlendorf, D.H, Suttles, J, Bernlohr, D.A.
Deposit date:2009-05-22
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Identification and characterization of a small molecule inhibitor of Fatty Acid binding proteins.
J.Med.Chem., 52, 2009
1HV2
DownloadVisualize
BU of 1hv2 by Molmil
SOLUTION STRUCTURE OF YEAST ELONGIN C IN COMPLEX WITH A VON HIPPEL-LINDAU PEPTIDE
Descriptor: ELONGIN C, VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR
Authors:Botuyan, M.V, Mer, G, Yi, G.-S, Koth, C.M, Case, D.A, Edwards, A.M, Chazin, W.J, Arrowsmith, C.H.
Deposit date:2001-01-05
Release date:2001-09-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and dynamics of yeast elongin C in complex with a von Hippel-Lindau peptide.
J.Mol.Biol., 312, 2001
2VUK
DownloadVisualize
BU of 2vuk by Molmil
Structure of the p53 core domain mutant Y220C bound to the stabilizing small-molecule drug PhiKan083
Descriptor: 1-(9-ethyl-9H-carbazol-3-yl)-N-methylmethanamine, CELLULAR TUMOR ANTIGEN P53, ZINC ION
Authors:Joerger, A.C, Boeckler, F.M, Fersht, A.R.
Deposit date:2008-05-26
Release date:2008-07-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Targeted Rescue of a Destabilized Mutant of P53 by an in Silico Screened Drug.
Proc.Natl.Acad.Sci.USA, 105, 2008
3M3O
DownloadVisualize
BU of 3m3o by Molmil
Crystal Structure of Agrocybe aegerita lectin AAL mutant R85A complexed with p-Nitrophenyl TF disaccharide
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Anti-tumor lectin, P-NITROPHENOL, ...
Authors:Feng, L, Li, D, Wang, D.
Deposit date:2010-03-09
Release date:2010-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into the recognition mechanism between an antitumor galectin AAL and the Thomsen-Friedenreich antigen
Faseb J., 24, 2010
2BG9
DownloadVisualize
BU of 2bg9 by Molmil
REFINED STRUCTURE OF THE NICOTINIC ACETYLCHOLINE RECEPTOR AT 4A RESOLUTION.
Descriptor: ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN, BETA CHAIN, ...
Authors:Unwin, N.
Deposit date:2004-12-17
Release date:2005-02-16
Last modified:2025-04-02
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Refined Structure of the Nicotinic Acetylcholine Receptor at 4A Resolution
J.Mol.Biol., 346, 2005
1ADF
DownloadVisualize
BU of 1adf by Molmil
CRYSTALLOGRAPHIC STUDIES OF TWO ALCOHOL DEHYDROGENASE-BOUND ANALOGS OF THIAZOLE-4-CARBOXAMIDE ADENINE DINUCLEOTIDE (TAD), THE ACTIVE ANABOLITE OF THE ANTITUMOR AGENT TIAZOFURIN
Descriptor: ALCOHOL DEHYDROGENASE, BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE, ZINC ION
Authors:Li, H, Hallows, W.A, Punzi, J.S, Marquez, V.E, Carrell, H.L, Pankiewicz, K.W, Watanabe, K.A, Goldstein, B.M.
Deposit date:1993-10-18
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystallographic studies of two alcohol dehydrogenase-bound analogues of thiazole-4-carboxamide adenine dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin.
Biochemistry, 33, 1994
4O02
DownloadVisualize
BU of 4o02 by Molmil
AlphaVBeta3 integrin in complex with monoclonal antibody FAB fragment.
Descriptor: 17E6 heavy chain, 17E6 light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Mahalingam, B, van Agthoven, J, Xiong, J, Arnaout, M.A.
Deposit date:2013-12-13
Release date:2014-04-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.605 Å)
Cite:Atomic basis for the species-specific inhibition of alpha V integrins by monoclonal antibody 17E6 is revealed by the crystal structure of alpha V beta 3 ectodomain-17E6 Fab complex.
J.Biol.Chem., 289, 2014
2X0W
DownloadVisualize
BU of 2x0w by Molmil
STRUCTURE OF THE P53 CORE DOMAIN MUTANT Y220C BOUND TO 5,6-dimethoxy- 2-methylbenzothiazole
Descriptor: 5,6-DIMETHOXY-2-METHYL-1,3-BENZOTHIAZOLE, CELLULAR TUMOR ANTIGEN P53, ZINC ION
Authors:Kaar, J.L, Basse, N, Joerger, A.C, Fersht, A.R.
Deposit date:2009-12-17
Release date:2010-01-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Toward the Rational Design of P53-Stabilizing Drugs: Probing the Surface of the Oncogenic Y220C Mutant.
Chem.Biol., 17, 2010
7PPC
DownloadVisualize
BU of 7ppc by Molmil
Ternary signalling complex of BMP10 bound to ALK1 and BMPRII
Descriptor: Bone morphogenetic protein 10, Bone morphogenetic protein receptor type-2, Serine/threonine-protein kinase receptor R3
Authors:Guo, J, Yu, M, Read, R.J, Li, W.
Deposit date:2021-09-13
Release date:2022-05-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structures of BMPRII extracellular domain in binary and ternary receptor complexes with BMP10.
Nat Commun, 13, 2022
6VSX
DownloadVisualize
BU of 6vsx by Molmil
X-ray crystal structure of the C-terminal domain of Bacillus subtilis RNA polymerase binding helicase HelD
Descriptor: DNA helicase, PHOSPHATE ION
Authors:Murakami, K.S, Chon, U.
Deposit date:2020-02-12
Release date:2020-06-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase.
Nat Commun, 11, 2020
9GLO
DownloadVisualize
BU of 9glo by Molmil
Crystal Structure of UFC1 C116E&T106S
Descriptor: GLYCEROL, SULFATE ION, Ubiquitin-fold modifier-conjugating enzyme 1
Authors:Kumar, M, Banerjee, S, Wiener, R.
Deposit date:2024-08-27
Release date:2025-05-07
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:UFC1 reveals the multifactorial and plastic nature of oxyanion holes in E2 conjugating enzymes.
Nat Commun, 16, 2025
9GLH
DownloadVisualize
BU of 9glh by Molmil
Crystal Structure of UFC1 T106S
Descriptor: SULFATE ION, Ubiquitin-fold modifier-conjugating enzyme 1
Authors:Kumar, M, Banerjee, S, Wiener, R.
Deposit date:2024-08-27
Release date:2025-05-07
Method:X-RAY DIFFRACTION (1.115 Å)
Cite:UFC1 reveals the multifactorial and plastic nature of oxyanion holes in E2 conjugating enzymes.
Nat Commun, 16, 2025
9GLI
DownloadVisualize
BU of 9gli by Molmil
Crystal Structure of UFC1 T106C
Descriptor: GLYCEROL, Ubiquitin-fold modifier-conjugating enzyme 1
Authors:Kumar, M, Banerjee, S, Wiener, R.
Deposit date:2024-08-27
Release date:2025-05-07
Method:X-RAY DIFFRACTION (1.426 Å)
Cite:UFC1 reveals the multifactorial and plastic nature of oxyanion holes in E2 conjugating enzymes.
Nat Commun, 16, 2025
9GLJ
DownloadVisualize
BU of 9glj by Molmil
Crystal Structure of UFC1 T106A
Descriptor: Ubiquitin-fold modifier-conjugating enzyme 1
Authors:Kumar, M, Banerjee, S, Wiener, R.
Deposit date:2024-08-27
Release date:2025-05-07
Method:X-RAY DIFFRACTION (1.213 Å)
Cite:UFC1 reveals the multifactorial and plastic nature of oxyanion holes in E2 conjugating enzymes.
Nat Commun, 16, 2025

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon