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3A3A
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BU of 3a3a by Molmil
Crystal structure of human selenocystine tRNA
Descriptor: selenocysteine tRNA
Authors:Itoh, Y, Chiba, S, Sekine, S.I, Yokoyama, S.
Deposit date:2009-06-11
Release date:2009-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of human selenocysteine tRNA.
Nucleic Acids Res., 37, 2009
3R4F
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BU of 3r4f by Molmil
Prohead RNA
Descriptor: MAGNESIUM ION, pRNA
Authors:Ding, F, Lu, C, Zhano, W, Rajashankar, K.R, Anderson, D.L, Jardine, P.J, Grimes, S, Ke, A.
Deposit date:2011-03-17
Release date:2011-04-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure and assembly of the essential RNA ring component of a viral DNA packaging motor.
Proc.Natl.Acad.Sci.USA, 108, 2011
6MV6
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BU of 6mv6 by Molmil
Crystal structure of RNAse 6
Descriptor: PHOSPHATE ION, Ribonuclease K6
Authors:Couture, J.-F, Doucet, N.
Deposit date:2018-10-24
Release date:2019-11-13
Last modified:2020-05-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Insights into Structural and Dynamical Changes Experienced by Human RNase 6 upon Ligand Binding.
Biochemistry, 59, 2020
6MV7
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BU of 6mv7 by Molmil
Crystal structure of RNAse 6
Descriptor: ADENOSINE MONOPHOSPHATE, Ribonuclease K6
Authors:Couture, J.-F, Doucet, N.
Deposit date:2018-10-24
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Insights into Structural and Dynamical Changes Experienced by Human RNase 6 upon Ligand Binding.
Biochemistry, 59, 2020
7ACT
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BU of 7act by Molmil
The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 10mer ssRNA
Descriptor: Nucleoprotein, ssRNA
Authors:Veverka, V.
Deposit date:2020-09-11
Release date:2020-10-28
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein.
Plos Pathog., 16, 2020
6W62
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BU of 6w62 by Molmil
Cryo-EM structure of Cas12i-crRNA complex
Descriptor: Cas12i, crRNA
Authors:Chang, L, Li, Z, Zhang, H.
Deposit date:2020-03-16
Release date:2020-09-16
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Mechanisms for target recognition and cleavage by the Cas12i RNA-guided endonuclease.
Nat.Struct.Mol.Biol., 27, 2020
3ZLA
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BU of 3zla by Molmil
Crystal structure of the nucleocapsid protein from Bunyamwera virus bound to RNA
Descriptor: NUCLEOPROTEIN, RNA
Authors:Ariza, A, Tanner, S.J, Walter, C.T, Dent, K.C, Shepherd, D.A, Wu, W, Matthews, S.V, Hiscox, J.A, Green, T.J, Luo, M, Elliot, R.M, Ashcroft, A.E, Stonehouse, N.J, Ranson, N.A, Barr, J.N, Edwards, T.A.
Deposit date:2013-01-29
Release date:2013-05-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Nucleocapsid Protein Structures from Orthobunyaviruses Reveal Insight Into Ribonucleoprotein Architecture and RNA Polymerization.
Nucleic Acids Res., 41, 2013
4V71
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BU of 4v71 by Molmil
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H.
Deposit date:2013-10-14
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Energy barriers and driving forces in tRNA translocation through the ribosome.
Nat.Struct.Mol.Biol., 20, 2013
4V75
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BU of 4v75 by Molmil
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H.
Deposit date:2013-10-14
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Energy barriers and driving forces in tRNA translocation through the ribosome.
Nat.Struct.Mol.Biol., 20, 2013
4V89
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BU of 4v89 by Molmil
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Zhou, J, Lancaster, L, Trakhanov, S, Noller, H.F.
Deposit date:2011-11-17
Release date:2014-07-09
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of release factor RF3 trapped in the GTP state on a rotated conformation of the ribosome.
Rna, 18, 2012
4F1N
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BU of 4f1n by Molmil
Crystal structure of Kluyveromyces polysporus Argonaute with a guide RNA
Descriptor: KpAGO, RNA 5'-R(P*UP*AP*AP*AP*AP*AP*AP*AP*A)-3'
Authors:Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J.
Deposit date:2012-05-07
Release date:2012-06-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.187 Å)
Cite:Structure of yeast Argonaute with guide RNA.
Nature, 486, 2012
1VOP
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BU of 1vop by Molmil
CONSERVED RNA COMPONENT OF THE PEPTIDYL TRANSFERASE CENTER, NMR, 33 STRUCTURES
Descriptor: 23S RIBOSOMAL RNA
Authors:Puglisi, E.V, Puglisi, J.D.
Deposit date:1997-08-30
Release date:1997-12-24
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of a conserved RNA component of the peptidyl transferase centre.
Nat.Struct.Biol., 4, 1997
5VT0
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BU of 5vt0 by Molmil
Escherichia coli 6S RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoenzyme
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Chen, J, Darst, S.A.
Deposit date:2017-05-15
Release date:2017-11-01
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase.
Mol. Cell, 68, 2017
5DET
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BU of 5det by Molmil
X-ray structure of human RBPMS in complex with the RNA
Descriptor: RNA (5'-R(*UP*CP*AP*C)-3'), RNA (5'-R(P*UP*CP*AP*CP*U)-3'), RNA-binding protein with multiple splicing, ...
Authors:Teplova, M, Farazi, T.A, Tuschl, T, Patel, D.J.
Deposit date:2015-08-25
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS.
Q. Rev. Biophys., 49, 2016
4OOW
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BU of 4oow by Molmil
HCV NS5B polymerase with a fragment of quercetagetin
Descriptor: CATECHOL, RNA-directed RNA polymerase
Authors:Guichou, J.F, Ahmed-Belkacem, A, Rozenn, B, Nazim, N, Hernandez, E, Pallier, C, Pawlotsky, J.M.
Deposit date:2014-02-04
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Inhibition of RNA binding to hepatitis C virus RNA-dependent RNA polymerase: a new mechanism for antiviral intervention.
Nucleic Acids Res., 42, 2014
6D6Q
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BU of 6d6q by Molmil
Human nuclear exosome-MTR4 RNA complex - overall reconstruction
Descriptor: DNA/RNA (62-MER), Exosome RNA helicase MTR4, Exosome complex component CSL4, ...
Authors:Weick, E.-M, Lima, C.D.
Deposit date:2018-04-22
Release date:2018-06-20
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex.
Cell, 173, 2018
4FF3
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BU of 4ff3 by Molmil
N4 mini-vRNAP transcription initiation complex, 3 min after soaking GTP, ATP and Mn
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Bacteriophage N4 P2 promoter, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Murakami, K.S, Basu, R.S.
Deposit date:2012-05-30
Release date:2012-12-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
4FF4
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BU of 4ff4 by Molmil
N4 mini-vRNAP transcription initiation complex, 4 min after soaking GTP, ATP and Mn
Descriptor: ADENOSINE MONOPHOSPHATE, Bacteriophage N4 P2 promoter, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Murakami, K.S.
Deposit date:2012-05-31
Release date:2012-12-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.026 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
4FF1
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BU of 4ff1 by Molmil
N4 mini-vRNAP transcription initiation complex, 1 min after soaking GTP, ATP and Mn
Descriptor: Bacteriophag N4 P2 promoter, PHOSPHATE ION, Virion RNA polymerase
Authors:Murakami, K.S, Basu, R.S.
Deposit date:2012-05-30
Release date:2012-12-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography.
J.Biol.Chem., 288, 2013
5K77
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BU of 5k77 by Molmil
Dbr1 in complex with 7-mer branched RNA
Descriptor: FE (II) ION, HYDROXIDE ION, RNA lariat debranching enzyme, ...
Authors:Clark, N.E, Taylor, A.B, Hart, P.J.
Deposit date:2016-05-25
Release date:2016-12-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Metal dependence and branched RNA cocrystal structures of the RNA lariat debranching enzyme Dbr1.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5JS1
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BU of 5js1 by Molmil
Human Argonaute2 Bound to an siRNA
Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ...
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2016-05-07
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Structural Analysis of Human Argonaute-2 Bound to a Modified siRNA Guide.
J.Am.Chem.Soc., 138, 2016
1MNB
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BU of 1mnb by Molmil
BIV TAT PEPTIDE (RESIDUES 68-81), NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: BIV TAR RNA, BIV TAT PEPTIDE
Authors:Puglisi, J.D, Chen, L, Blanchard, S, Frankel, A.D.
Deposit date:1996-07-25
Release date:1997-01-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex.
Science, 270, 1995
5VSU
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BU of 5vsu by Molmil
Structure of yeast U6 snRNP with 2'-phosphate terminated U6 RNA
Descriptor: Saccharomyces cerevisiae strain T8 chromosome XII sequence, U4/U6 snRNA-associated-splicing factor PRP24, U6 snRNA-associated Sm-like protein LSm2, ...
Authors:Montemayor, E.J.
Deposit date:2017-05-12
Release date:2018-05-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA.
Nat Commun, 9, 2018
1W94
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BU of 1w94 by Molmil
Crystal Structure of Mil (Mth680), an archaeal Imp4-like protein
Descriptor: PROBABLE BRIX-DOMAIN RIBOSOMAL BIOGENESIS PROTEIN
Authors:Ng, C.L, Antson, A.A, Ortiz-Lombardia, M.
Deposit date:2004-10-06
Release date:2005-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Mil (Mth680): Internal Duplication and Similarity between the Imp4/Brix Domain and the Anticodon-Binding Domain of Class Iia Aminoacyl-tRNA Synthetases
Embo Rep., 6, 2005
1MNX
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BU of 1mnx by Molmil
The Solution Structure of the Loop E Region of the 5S rRNA from Spinach Chloroplasts.
Descriptor: Loop E from 5S rRNA
Authors:Vallurupalli, P, Moore, P.B.
Deposit date:2002-09-06
Release date:2003-01-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Solution Structure of the Loop E Region of the 5S rRNA from Spinach Chloroplasts
J.Mol.Biol., 325, 2003

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