Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 60 results

3SZP
DownloadVisualize
BU of 3szp by Molmil
Full-length structure of the Vibrio cholerae virulence activator, AphB, a member of the LTTR protein family
Descriptor: Transcriptional regulator, LysR family
Authors:Taylor, J.L, De Silva, R.S, Kovacikova, G, Lin, W, Taylor, R.K, Skorupski, K, Kull, F.J.
Deposit date:2011-07-19
Release date:2011-11-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:The crystal structure of AphB, a virulence gene activator from Vibrio cholerae, reveals residues that influence its response to oxygen and pH.
Mol.Microbiol., 83, 2012
7QA0
DownloadVisualize
BU of 7qa0 by Molmil
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound 1456
Descriptor: Multiple virulence factor regulator MvfR, ~{N}-[[2-(3-chloranyl-4-propan-2-yloxy-phenyl)-1,3-thiazol-5-yl]methyl]-2-(trifluoromethyl)pyridin-4-amine
Authors:Schmelz, S, Blankenfeldt, W.
Deposit date:2021-11-15
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Divergent Synthesis and Biological Evaluation of inverse agonists targeting PqsR
To Be Published
7QAV
DownloadVisualize
BU of 7qav by Molmil
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound N-((2-(4-cyclopropylphenyl)thiazol-5-yl)methyl)-2-(trifluoromethyl)pyridin-4-amine
Descriptor: Multiple virulence factor regulator MvfR, ~{N}-[[2-(4-cyclopropylphenyl)-1,3-thiazol-5-yl]methyl]-2-(trifluoromethyl)pyridin-4-amine
Authors:Schmelz, S, Blankenfeldt, W.
Deposit date:2021-11-17
Release date:2022-11-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Divergent Synthesis and Biological Evaluation of inverse agonists targeting PqsR
To Be Published
7QA3
DownloadVisualize
BU of 7qa3 by Molmil
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound N-((2-(4-phenoxyphenyl)thiazol-5-yl)methyl)-2-(trifluoromethyl)pyridin-4-amine
Descriptor: Multiple virulence factor regulator MvfR, N-[[2-(4-phenoxyphenyl)-1,3-thiazol-5-yl]methyl]-2-(trifluoromethyl)pyridin-4-amine
Authors:Schmelz, S, Blankenfeldt, W.
Deposit date:2021-11-15
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Divergent Synthesis and Biological Evaluation of inverse agonists targeting PqsR
To Be Published
6G1B
DownloadVisualize
BU of 6g1b by Molmil
Corynebacterium glutamicum OxyR, oxidized form
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, FORMIC ACID, HYDROGEN PEROXIDE, ...
Authors:Young, D.R, Pedre, B.P, Messens, J.M.
Deposit date:2018-03-21
Release date:2018-12-05
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6G1D
DownloadVisualize
BU of 6g1d by Molmil
Corynebacterium glutamicum OxyR C206 mutant
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FORMIC ACID, ...
Authors:Young, D.R, Pedre, B.P, Messens, J.M.
Deposit date:2018-03-21
Release date:2018-12-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.992 Å)
Cite:Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6G4R
DownloadVisualize
BU of 6g4r by Molmil
Corynebacterium glutamicum OxyR C206S mutant, H2O2-bound
Descriptor: 1,2-ETHANEDIOL, HYDROGEN PEROXIDE, Hydrogen peroxide-inducible genes activator, ...
Authors:Young, D.R, Pedre, B.P, Messens, J.M.
Deposit date:2018-03-28
Release date:2018-12-05
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7D98
DownloadVisualize
BU of 7d98 by Molmil
Crystal structure of full-length CbnR complexed with the target DNA complex
Descriptor: DNA (56-mer), LysR-type regulatory protein
Authors:Senda, M, Giannopoulou, E, Senda, T.
Deposit date:2020-10-12
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of the full-length LysR-type transcription regulator CbnR in complex with promoter DNA.
Febs J., 288, 2021
7DMW
DownloadVisualize
BU of 7dmw by Molmil
Crystal structure of CcpC regulatory domain in complex with citrate from Bacillus amyloliquefaciens
Descriptor: CITRATE ANION, CcpC
Authors:Chen, J, Wang, L, Shang, F, Liu, W, Chen, Y, Lan, J, Bu, T, Bai, X, Xu, Y.
Deposit date:2020-12-08
Release date:2021-10-27
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Functional and structural analysis of catabolite control protein C that responds to citrate.
Sci Rep, 11, 2021
7DWO
DownloadVisualize
BU of 7dwo by Molmil
Crystal structure of Vibrio fischeri DarR in complex with DNA reveals the transcriptional activation mechanism of LTTR family members
Descriptor: Predicted DNA-binding transcriptional regulator
Authors:Wang, W.W, Wu, H, He, J.H, Yu, F.
Deposit date:2021-01-17
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.611 Å)
Cite:Crystal structure details of Vibrio fischeri DarR and mutant DarR-M202I from LTTR family reveals their activation mechanism.
Int.J.Biol.Macromol., 183, 2021
7DWN
DownloadVisualize
BU of 7dwn by Molmil
Crystal structure of Vibrio fischeri DarR in complex with DNA reveals the transcriptional activation mechanism of LTTR family members
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Predicted DNA-binding transcriptional regulator
Authors:Wang, W.W, Wu, H, He, J.H, Yu, F.
Deposit date:2021-01-17
Release date:2021-07-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure details of Vibrio fischeri DarR and mutant DarR-M202I from LTTR family reveals their activation mechanism.
Int.J.Biol.Macromol., 183, 2021
7W07
DownloadVisualize
BU of 7w07 by Molmil
Itaconate inducible LysR-Type Transcriptional regulator (ITCR) in complex with itaconate, Space group C121.
Descriptor: 2-methylidenebutanedioic acid, SULFATE ION, Transcriptional regulator, ...
Authors:Sun, P.K, Wang, B, Li, X.J.
Deposit date:2021-11-17
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:A genetically encoded fluorescent biosensor for detecting itaconate with subcellular resolution in living macrophages.
Nat Commun, 13, 2022
7W08
DownloadVisualize
BU of 7w08 by Molmil
Itaconate inducible LysR-Type Transcriptional regulator (ITCR) in APO form, Space group P1.
Descriptor: Transcriptional regulator, LysR family
Authors:Sun, P.K, Wang, B, Li, X.J.
Deposit date:2021-11-17
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:A genetically encoded fluorescent biosensor for detecting itaconate with subcellular resolution in living macrophages.
Nat Commun, 13, 2022
7W06
DownloadVisualize
BU of 7w06 by Molmil
Itaconate inducible LysR-Type Transcriptional regulator (ITCR) in complex with itaconate (SeMet labeled), Space group C121.
Descriptor: 2-methylidenebutanedioic acid, CHLORIDE ION, SULFATE ION, ...
Authors:Sun, P.K, Wang, B, Wang, Z.X, Qi, S, Li, X.J.
Deposit date:2021-11-17
Release date:2022-10-26
Last modified:2022-11-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A genetically encoded fluorescent biosensor for detecting itaconate with subcellular resolution in living macrophages.
Nat Commun, 13, 2022
7YHJ
DownloadVisualize
BU of 7yhj by Molmil
Effector binding domain of LysR-Type transcription factor LrhA from E. coli
Descriptor: DI(HYDROXYETHYL)ETHER, Probable HTH-type transcriptional regulator LrhA, SULFATE ION
Authors:Xie, C, Jiang, X.
Deposit date:2022-07-13
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.237 Å)
Cite:Effector binding domain of LysR-Type transcription factor LrhA from E. coli
To Be Published
2ESN
DownloadVisualize
BU of 2esn by Molmil
The crystal structure of probable transcriptional regulator PA0477 from Pseudomonas aeruginosa
Descriptor: probable transcriptional regulator
Authors:Lunin, V.V, Chang, C, Skarina, T, Gorodischenskaya, E, Edwards, A.M, Joachimiak, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-10-26
Release date:2005-11-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of putative transcriptional regulator Pa0477 from Pseudomonas aeruginosa
To be Published
2H98
DownloadVisualize
BU of 2h98 by Molmil
Crystal structure of the effector binding domain of a CatM variant, CatM(V158M)
Descriptor: CHLORIDE ION, HTH-type transcriptional regulator catM
Authors:Ezezika, O.C, Neidle, E.L, Momany, C.
Deposit date:2006-06-09
Release date:2007-06-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the altered regulatory roles of three LysR-type transcritional variants of CatM and BenM: CatM(V158M), CatM(R156H) and BenM(R156H/T157S)
To be Published
2H99
DownloadVisualize
BU of 2h99 by Molmil
Crystal structure of the effector binding domain of a BenM variant (R156H,T157S)
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Ezezika, O.C, Craven, S.H, Neidle, E.L, Momany, C.
Deposit date:2006-06-09
Release date:2007-06-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1.
Mol.Microbiol., 72, 2009
2H9B
DownloadVisualize
BU of 2h9b by Molmil
Crystal structure of the effector binding domain of a BenM variant (BenM R156H/T157S)
Descriptor: CHLORIDE ION, HTH-type transcriptional regulator benM, SULFATE ION
Authors:Ezezika, O.C, Craven, S.H, Neidle, E.L, Momany, C.
Deposit date:2006-06-09
Release date:2007-06-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1.
Mol.Microbiol., 72, 2009
3ISP
DownloadVisualize
BU of 3isp by Molmil
Crystal structure of ArgP from Mycobacterium tuberculosis
Descriptor: HTH-type transcriptional regulator Rv1985c/MT2039
Authors:Zhou, X, Lou, Z, Sheng, F, Bartlam, M, Wang, H, Rao, Z.
Deposit date:2009-08-27
Release date:2010-02-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of ArgP from Mycobacterium tuberculosis Confirms Two Distinct Conformations of Full-length LysR Transcriptional Regulators and Reveals Its Function in DNA Binding and Transcriptional Regulation.
J.Mol.Biol., 2009
3K1M
DownloadVisualize
BU of 3k1m by Molmil
Crystal Structure of full-length BenM, R156H mutant
Descriptor: CHLORIDE ION, GLYCEROL, HTH-type transcriptional regulator benM, ...
Authors:Ruangprasert, A, Momany, C, Neidle, E.L, Craven, S.H.
Deposit date:2009-09-28
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structure of Full-length BenM
To be Published
5Y2V
DownloadVisualize
BU of 5y2v by Molmil
Strcutrue of the full-length CcmR complexed with 2-OG from Synechocystis PCC6803
Descriptor: 2-OXOGLUTARIC ACID, PHOSPHATE ION, Rubisco operon transcriptional regulator
Authors:Jiang, Y.L, Wang, X.P, Sun, H, Cheng, W, Han, S.J, Li, W.F, Chen, Y, Zhou, C.Z.
Deposit date:2017-07-27
Release date:2017-12-27
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Coordinating carbon and nitrogen metabolic signaling through the cyanobacterial global repressor NdhR.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3K1P
DownloadVisualize
BU of 3k1p by Molmil
Crystal Structure of full-length BenM E226K mutant
Descriptor: HTH-type transcriptional regulator benM
Authors:Ruangprasert, A, Momany, C, Neidle, E.L, Craven, S.H.
Deposit date:2009-09-28
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of Full-length BenM
To be Published
5YDW
DownloadVisualize
BU of 5ydw by Molmil
Full-length structure of HypT from Salmonella typhimuriuma (hypochlorite-specific LysR-type transcriptional regulator)
Descriptor: Cell density-dependent motility repressor
Authors:Jo, I, Hong, S, Ahn, J, Ha, N.C.
Deposit date:2017-09-15
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for HOCl recognition and regulation mechanisms of HypT, a hypochlorite-specific transcriptional regulator.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
3K1N
DownloadVisualize
BU of 3k1n by Molmil
Crystal Structure of full-length BenM
Descriptor: CHLORIDE ION, HTH-type transcriptional regulator benM, IMIDAZOLE
Authors:Ruangprasert, A, Momany, C, Neidle, E.L, Craven, S.H.
Deposit date:2009-09-28
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structure of Full-length BenM
To be Published

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon