4OFA
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![BU of 4ofa by Molmil](/molmil-images/mine/4ofa) | |
7KZ0
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![BU of 7kz0 by Molmil](/molmil-images/mine/7kz0) | Human MBD4 glycosylase domain bound to DNA containing substrate analog 2'-deoxy-pseudouridine | Descriptor: | DNA (5'-D(*CP*CP*AP*GP*CP*GP*(P2U)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), GLYCEROL, ... | Authors: | Pidugu, L.S, Pozharski, E, Drohat, A.C. | Deposit date: | 2020-12-09 | Release date: | 2021-11-10 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | Structural Insights into the Mechanism of Base Excision by MBD4. J.Mol.Biol., 433, 2021
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7KZ1
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![BU of 7kz1 by Molmil](/molmil-images/mine/7kz1) | Human MBD4 glycosylase domain bound to DNA containing an abasic site | Descriptor: | 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*GP*CP*GP*(ORP)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), ... | Authors: | Pidugu, L.S, Bright, H, Pozharski, E, Drohat, A.C. | Deposit date: | 2020-12-09 | Release date: | 2021-11-10 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | Structural Insights into the Mechanism of Base Excision by MBD4. J.Mol.Biol., 433, 2021
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7KZG
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![BU of 7kzg by Molmil](/molmil-images/mine/7kzg) | Human MBD4 glycosylase domain bound to DNA containing oxacarbenium-ion analog 1-aza-2'-deoxyribose | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | Authors: | Pidugu, L.S, Pozharski, E, Drohat, A.C. | Deposit date: | 2020-12-10 | Release date: | 2021-11-10 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.68 Å) | Cite: | Structural Insights into the Mechanism of Base Excision by MBD4. J.Mol.Biol., 433, 2021
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4E9F
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![BU of 4e9f by Molmil](/molmil-images/mine/4e9f) | Structure of the glycosylase domain of MBD4 bound to AP site containing DNA | Descriptor: | 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*GP*CP*GP*(3DR)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), ... | Authors: | Morera, S, Vigouroux, A. | Deposit date: | 2012-03-21 | Release date: | 2012-08-08 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.79 Å) | Cite: | Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
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5CHZ
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![BU of 5chz by Molmil](/molmil-images/mine/5chz) | |
4E9E
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![BU of 4e9e by Molmil](/molmil-images/mine/4e9e) | Structure of the glycosylase domain of MBD4 | Descriptor: | Methyl-CpG-binding domain protein 4 | Authors: | Morera, S, Vigouroux, A. | Deposit date: | 2012-03-21 | Release date: | 2012-08-08 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
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4EA4
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![BU of 4ea4 by Molmil](/molmil-images/mine/4ea4) | Structure of the glycosylase domain of MBD4 bound to 5hmU-containing DNA | Descriptor: | DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 | Authors: | Morera, S, Vigouroux, A. | Deposit date: | 2012-03-22 | Release date: | 2012-08-08 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
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6VJW
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![BU of 6vjw by Molmil](/molmil-images/mine/6vjw) | Crystal structure of WT hMBD4 complexed with T:G mismatch DNA | Descriptor: | DNA (5'-D(*CP*CP*AP*GP*CP*GP*(ORP)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 | Authors: | Jung, H, Lee, S. | Deposit date: | 2020-01-17 | Release date: | 2021-01-27 | Last modified: | 2023-10-11 | Method: | X-RAY DIFFRACTION (2.02 Å) | Cite: | Catalytic mechanism of the mismatch-specific DNA glycosylase methyl-CpG-binding domain 4. Biochem.J., 477, 2020
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4EA5
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![BU of 4ea5 by Molmil](/molmil-images/mine/4ea5) | Structure of the glycoslyase domain of MBD4 bound to a 5hmU containing DNA | Descriptor: | DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 | Authors: | Morera, S, Vigouroux, A. | Deposit date: | 2012-03-22 | Release date: | 2012-08-08 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.14 Å) | Cite: | Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
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4OFE
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![BU of 4ofe by Molmil](/molmil-images/mine/4ofe) | |
4OFH
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![BU of 4ofh by Molmil](/molmil-images/mine/4ofh) | |
4E9G
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![BU of 4e9g by Molmil](/molmil-images/mine/4e9g) | structure of the glycosylase domain of MBD4 bound to thymine containing DNA | Descriptor: | DNA (5'-D(*CP*CP*AP*GP*CP*GP*TP*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 | Authors: | Morera, S, Vigouroux, A. | Deposit date: | 2012-03-21 | Release date: | 2012-08-08 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
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4LG7
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![BU of 4lg7 by Molmil](/molmil-images/mine/4lg7) | Crystal structure MBD4 MBD domain in complex with methylated CpG DNA | Descriptor: | DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3'), Methyl-CpG-binding domain protein 4, UNKNOWN ATOM OR ION | Authors: | Xu, C, Tempel, W, Wernimont, A.K, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) | Deposit date: | 2013-06-27 | Release date: | 2013-07-17 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure MBD4 MBD domain in complex with methylated CpG DNA To be Published
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3IHO
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![BU of 3iho by Molmil](/molmil-images/mine/3iho) | The C-terminal glycosylase domain of human MBD4 | Descriptor: | Methyl-CpG-binding domain protein 4 | Authors: | Amaya, M.F, Xu, C, Bian, C.B, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC) | Deposit date: | 2009-07-30 | Release date: | 2009-08-25 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | The C-terminal glycosylase domain of human MBD4 To be Published
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4DK9
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![BU of 4dk9 by Molmil](/molmil-images/mine/4dk9) | Crystal Structure of MBD4 Catalytic Domain Bound to Abasic DNA | Descriptor: | 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3', Methyl-CpG-binding domain protein 4, ... | Authors: | Manvilla, B.A, Toth, E.A, Drohat, A.C. | Deposit date: | 2012-02-03 | Release date: | 2012-04-25 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.76 Å) | Cite: | Crystal Structure of Human Methyl-Binding Domain IV Glycosylase Bound to Abasic DNA. J.Mol.Biol., 420, 2012
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4E9H
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![BU of 4e9h by Molmil](/molmil-images/mine/4e9h) | structure of glycosylase domain of MBD4 bound to 5hmU containing DNA | Descriptor: | DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 | Authors: | Morera, S, Vigouroux, A. | Deposit date: | 2012-03-21 | Release date: | 2012-08-08 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
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2MOE
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![BU of 2moe by Molmil](/molmil-images/mine/2moe) | |