Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6QWC
DownloadVisualize
BU of 6qwc by Molmil
Crystal structure of KPC-4 complexed with relebactam (1 hour soak)
Descriptor: (2S,5R)-1-formyl-N-(piperidin-4-yl)-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase, GLYCEROL, ...
Authors:Tooke, C.L, Hinchliffe, P, Spencer, J.
Deposit date:2019-03-05
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Molecular Basis of Class A beta-Lactamase Inhibition by Relebactam.
Antimicrob.Agents Chemother., 63, 2019
6QRB
DownloadVisualize
BU of 6qrb by Molmil
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with inhibitor
Descriptor: 5-azanyl-3-[1-[[(3~{R})-1-(phenylmethyl)piperidin-3-yl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile, tRNA (guanine-N(1)-)-methyltransferase
Authors:Thomas, S.E, Whitehouse, A.J, Coyne, A.G, Abell, C, Mendes, V, Blundell, T.L.
Deposit date:2019-02-19
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Development of Inhibitors against Mycobacterium abscessus tRNA (m 1 G37) Methyltransferase (TrmD) Using Fragment-Based Approaches.
J.Med.Chem., 62, 2019
5VU5
DownloadVisualize
BU of 5vu5 by Molmil
TNA polymerase, apo
Descriptor: DNA polymerase
Authors:Chim, N, Chaput, J.C.
Deposit date:2017-05-18
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun, 8, 2017
5FOR
DownloadVisualize
BU of 5for by Molmil
Cryptic TIR
Descriptor: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, PENTAETHYLENE GLYCOL, PHOSPHOINOSITIDE 3-KINASE ADAPTER PROTEIN 1
Authors:Halabi, S, Gay, N.J, Moncrieffe, M.C.
Deposit date:2015-11-25
Release date:2016-12-07
Last modified:2017-03-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Toll/Interleukin-1 Receptor (TIR) Domain of the B-cell Adaptor That Links Phosphoinositide Metabolism with the Negative Regulation of the Toll-like Receptor (TLR) Signalosome.
J. Biol. Chem., 292, 2017
6ZBX
DownloadVisualize
BU of 6zbx by Molmil
Structure of the catalytic domain of the Bacillus circulans alpha-1,6 Mannanase in complex with an alpha-1,6- alpha-manno-cyclophellitol carbasugar-stabilised trisaccharide inhibitor
Descriptor: (1~{S},2~{R},3~{S},4~{R},5~{R})-5-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol, (1~{S},4~{S},5~{R})-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol, 1,2-ETHANEDIOL, ...
Authors:Schroeder, S, Offen, W.A, Jin, Y, De Boer, C, Enoterpi, J, Marino, L, van der Marel, G.A, Codee, J.D.C, Overkleeft, H.S, Davies, G.J.
Deposit date:2020-06-09
Release date:2021-04-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Development of Non-Hydrolysable Oligosaccharide Activity-Based Inactivators for Endoglycanases: A Case Study on alpha-1,6 Mannanases.
Chemistry, 27, 2021
6QWI
DownloadVisualize
BU of 6qwi by Molmil
Structure of beta-glucosidase A from Paenibacillus polymyxa complexed with multivalent inhibitors.
Descriptor: (2~{S},3~{S},4~{R})-2-[[4-[4-(2-ethoxyethoxy)phenyl]-1,2,3-triazol-1-yl]methyl]pyrrolidine-3,4-diol, Beta-glucosidase A
Authors:Jimenez-Ortega, E, Sanz-Aparicio, J.
Deposit date:2019-03-05
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis of the inhibition of GH1 beta-glucosidases by multivalent pyrrolidine iminosugars.
Bioorg.Chem., 89, 2019
8Q3S
DownloadVisualize
BU of 8q3s by Molmil
HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide
Descriptor: CHLORIDE ION, COENZYME A, GLY-ASN-CYS-PHE-SER-LYS-ALA-ARG, ...
Authors:Dian, C, Giglione, C, Meinnel, T.
Deposit date:2023-08-04
Release date:2024-08-14
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide
to be published
6GMG
DownloadVisualize
BU of 6gmg by Molmil
Structure of a glutamine donor mimicking inhibitory peptide shaped by the catalytic cleft of microbial transglutaminase
Descriptor: CITRATE ANION, DI(HYDROXYETHYL)ETHER, PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, ...
Authors:Schmelz, S, Juettner, N.E, Fuchsbauer, H.L, Scrima, A.
Deposit date:2018-05-25
Release date:2018-10-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a glutamine donor mimicking inhibitory peptide shaped by the catalytic cleft of microbial transglutaminase.
FEBS J., 285, 2018
7RRZ
DownloadVisualize
BU of 7rrz by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-30
Descriptor: (1S,2R,4S,5R,6S)-5-(4-hydroxyphenyl)-N-(4-methoxyphenyl)-6-{4-[3-(piperidin-1-yl)propoxy]phenyl}-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]heptane-2-sulfonamide, Estrogen receptor
Authors:Min, J, Nwachukwu, J.C, Min, C.K, Njeri, J.W, Srinivasan, S, Rangarajan, E.S, Nettles, C.C, Yan, S, Houtman, R, Griffin, P.R, Izard, T, Katzenellenbogen, B.S, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2021-08-10
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Dual-mechanism estrogen receptor inhibitors.
Proc.Natl.Acad.Sci.USA, 118, 2021
8B3E
DownloadVisualize
BU of 8b3e by Molmil
Variant Surface Glycoprotein VSG397
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Variant surface glycoprotein 397
Authors:Zeelen, J.P, Stebbins, C.E, Dakovic, S, Foti, K.
Deposit date:2022-09-16
Release date:2023-01-25
Last modified:2023-04-19
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structural similarities between the metacyclic and bloodstream form variant surface glycoproteins of the African trypanosome.
Plos Negl Trop Dis, 17, 2023
6QRM
DownloadVisualize
BU of 6qrm by Molmil
HsNMT1 in complex with both MyrCoA and GNCFSKRRAA substrates
Descriptor: Apoptosis-inducing factor 3, CHLORIDE ION, COENZYME A, ...
Authors:Dian, C, Riviere, F.B, Asensio, T, Giglione, C, Meinnel, T.
Deposit date:2019-02-19
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:High-resolution snapshots of human N-myristoyltransferase in action illuminate a mechanism promoting N-terminal Lys and Gly myristoylation.
Nat Commun, 11, 2020
8BE1
DownloadVisualize
BU of 8be1 by Molmil
SARS-CoV-2 RBD in complex with a Fab fragment of a neutralising antibody mRBD2
Descriptor: Antibody heavy chain, Antibody light chain, SULFATE ION, ...
Authors:Lulla, A, Brear, P, Fischer, K, Hollfelder, F, Hyvonen, M.
Deposit date:2022-10-21
Release date:2023-01-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Microfluidics-enabled fluorescence-activated cell sorting of single pathogen-specific antibody secreting cells for the rapid discovery of monoclonal antibodies
Biorxiv, 2023
6GID
DownloadVisualize
BU of 6gid by Molmil
High resolution crystal structure of substrate-free human neprilysin
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Moss, S, Subramanian, V, Acharya, K.R.
Deposit date:2018-05-10
Release date:2018-06-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High resolution crystal structure of substrate-free human neprilysin.
J. Struct. Biol., 204, 2018
7LLE
DownloadVisualize
BU of 7lle by Molmil
Crystal structure of GenB4 in complex with PLP
Descriptor: C-6' aminotransferase, PYRIDOXAL-5'-PHOSPHATE
Authors:Bury, P.S, Huang, F, Leadlay, P.F, Dias, M.V.B.
Deposit date:2021-02-03
Release date:2021-09-22
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Crystal structure of GenB4 in complex with external aldimine of PLP-sisomicin
Acs Catalysis, 2021
7RS3
DownloadVisualize
BU of 7rs3 by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-29
Descriptor: (1S,2R,4S)-6-[4-(benzyloxy)phenyl]-5-(4-hydroxyphenyl)-N-(4-methoxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide, CYSTEINE, Estrogen receptor, ...
Authors:Min, J, Nwachukwu, J.C, Min, C.K, Njeri, J.W, Srinivasan, S, Rangarajan, E.S, Nettles, C.C, Yan, S, Houtman, R, Griffin, P.R, Izard, T, Katzenellenbogen, B.S, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2021-08-10
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Dual-mechanism estrogen receptor inhibitors.
Proc.Natl.Acad.Sci.USA, 118, 2021
6YWR
DownloadVisualize
BU of 6ywr by Molmil
Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148H variant (space group C2)
Descriptor: FLAVIN MONONUCLEOTIDE, Multi-sensor hybrid histidine kinase, SULFATE ION
Authors:Remeeva, A, Nazarenko, V, Kovalev, K, Gushchin, I.
Deposit date:2020-04-30
Release date:2021-04-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Insights into the mechanisms of light-oxygen-voltage domain color tuning from a set of high-resolution X-ray structures.
Proteins, 2021
6BU6
DownloadVisualize
BU of 6bu6 by Molmil
Crystal Structure of the Human vaccinia-related kinase bound to a bis-difluorophenol-aminopyridine inhibitor
Descriptor: 4,4'-(2-aminopyridine-3,5-diyl)bis(2,6-difluorophenol), CHLORIDE ION, GLYCEROL, ...
Authors:Counago, R.M, dos Reis, C.V, de Souza, G.P, Santiago, A.S, Azevedo, A, Guimaraes, C, Mascarello, A, Gama, F, Ferreira, M, Massirer, K.B, Arruda, P, Edwards, A.M, Elkins, J.M, Structural Genomics Consortium (SGC)
Deposit date:2017-12-08
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Human vaccinia-related kinase bound to a bis-difluorophenol-aminopyridine inhibitor
To Be Published
7LM0
DownloadVisualize
BU of 7lm0 by Molmil
Crystal structure of GenB3 in complex with PLP
Descriptor: C-6' aminotransferase, DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE
Authors:Bury, P.S, Huang, F, Leadlay, P.F, Dias, M.V.B.
Deposit date:2021-02-04
Release date:2021-09-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal structure of GenB4 in complex with external aldimine of PLP-sisomicin
Acs Catalysis, 2021
6BJG
DownloadVisualize
BU of 6bjg by Molmil
CIRV p19 mutant T111H in complex with siRNA
Descriptor: RNA (5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3'), RNA (5'-R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'), RNA silencing suppressor p19
Authors:Foss, D.V, Schirle, N, Pezacki, J.P, Macrae, I.J.
Deposit date:2017-11-06
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structural insights into interactions between viral suppressor of RNA silencing protein p19 mutants and small RNAs.
Febs Open Bio, 9, 2019
6YWG
DownloadVisualize
BU of 6ywg by Molmil
Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148N variant
Descriptor: FLAVIN MONONUCLEOTIDE, GLYCEROL, Multi-sensor hybrid histidine kinase
Authors:Remeeva, A, Nazarenko, V, Kovalev, K, Gushchin, I.
Deposit date:2020-04-29
Release date:2021-04-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Insights into the mechanisms of light-oxygen-voltage domain color tuning from a set of high-resolution X-ray structures.
Proteins, 2021
7RS0
DownloadVisualize
BU of 7rs0 by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-18
Descriptor: (1R,2S,4R,5R,6R)-5-(4-hydroxyphenyl)-N-(4-methoxyphenyl)-6-(4-propoxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]heptane-2-sulfonamide, Estrogen receptor
Authors:Min, J, Nwachukwu, J.C, Min, C.K, Njeri, J.W, Srinivasan, S, Rangarajan, E.S, Nettles, C.C, Yan, S, Houtman, R, Griffin, P.R, Izard, T, Katzenellenbogen, B.S, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2021-08-10
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Dual-mechanism estrogen receptor inhibitors.
Proc.Natl.Acad.Sci.USA, 118, 2021
5FSC
DownloadVisualize
BU of 5fsc by Molmil
Structure of tectonin 2 from Laccaria bicolor in complex with allyl- alpha_4-methyl-mannoside
Descriptor: MAGNESIUM ION, TECTONIN 2, prop-2-en-1-yl 4-O-methyl-alpha-D-mannopyranoside
Authors:Sommer, R, Bleuer, S, Titz, A, Kunzler, M, Varrot, A.
Deposit date:2016-01-04
Release date:2017-03-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of Fungal Tectonin in Complex with O-Methylated Glycans Suggest Key Role in Innate Immune Defense.
Structure, 26, 2018
6ZGN
DownloadVisualize
BU of 6zgn by Molmil
Crystal structure of VirB8-like OrfG central domain of Streptococcus thermophilus ICESt3; a putative assembly factor of a gram positive conjugative Type IV secretion system.
Descriptor: Putative transfer protein
Authors:Cappele, J, Mohamad-Ali, A, Leblond-Bourget, N, Payot-Lacroix, S, Mathiot, S, Didierjean, C, Favier, F, Douzi, B.
Deposit date:2020-06-19
Release date:2021-04-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICE St3 From Streptococcus thermophilus .
Front Mol Biosci, 8, 2021
6QTQ
DownloadVisualize
BU of 6qtq by Molmil
Crystal structure of an Arabidopsis WD40 domain in complex with photoreceptor
Descriptor: E3 ubiquitin-protein ligase COP1, GLYCEROL, SULFATE ION, ...
Authors:Hothorn, M, Lau, K.
Deposit date:2019-02-25
Release date:2019-07-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Plant photoreceptors and their signaling components compete for COP1 binding via VP peptide motifs.
Embo J., 38, 2019
5VDT
DownloadVisualize
BU of 5vdt by Molmil
Human cyclic GMP-AMP synthase (cGAS) in complex with 3',3'-cGAMP
Descriptor: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, Cyclic GMP-AMP synthase, ZINC ION
Authors:Byrnes, L.J, Hall, J.D.
Deposit date:2017-04-03
Release date:2017-09-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.576 Å)
Cite:The catalytic mechanism of cyclic GMP-AMP synthase (cGAS) and implications for innate immunity and inhibition.
Protein Sci., 26, 2017

224201

數據於2024-08-28公開中

PDB statisticsPDBj update infoContact PDBjnumon