PDB: 46006 resultsInfo pagesStatus searchChemie searchBIRD

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8GCJ	PCNA Descriptor: Proliferating cell nuclear antigen Authors: Vandborg, B.C, Bruning, J.B. Deposit date: 2023-03-01 Release date: 2024-05-29 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Crystal structure of apo pcna To Be Published
5OO1	Cdk2(F80C, C177A) covalent adduct with C37 at F80C Descriptor: Cyclin-dependent kinase 2, ~{N}-(4-pyrimidin-2-ylphenyl)propanamide Authors: Craven, G, Morgan, R.M.L, Mann, D.J. Deposit date: 2017-08-04 Release date: 2018-08-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: High-throughput kinetic analysis for target-directed covalent ligand discovery To be published
8RCM	Escherichia coli paused disome complex (Non-rotated disome interface class 2) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-06 Release date: 2024-03-06 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCS	Escherichia coli paused disome complex (Rotated disome interface class 1) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-07 Release date: 2024-03-06 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (4.46 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8RCT	Escherichia coli paused disome complex (Rotated disome interface class 2) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-07 Release date: 2024-03-06 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (5.32 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
7XNX	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Cheng, J, Beckmann, R. Deposit date: 2022-04-30 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Cancer Discov, 13, 2023
7JT1	70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
8RCL	Escherichia coli paused disome complex (Non-rotated disome interface class 1) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-12-06 Release date: 2024-03-13 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
3FK6	Crystal structure of TetR triple mutant (H64K, S135L, S138I) Descriptor: Tetracycline repressor protein class B from transposon Tn10, Tetracycline repressor protein class D Authors: Klieber, M.A, Scholz, O, Lochner, S, Gmeiner, P, Hillen, W, Muller, Y.A. Deposit date: 2008-12-16 Release date: 2009-10-27 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural origins for selectivity and specificity in an engineered bacterial repressor-inducer pair. Febs J., 276, 2009
8R3V	Escherichia coli paused disome complex (non-rotated disome interface) Descriptor: 1,4-DIAMINOBUTANE, 16S ribosomal RNA, 23S ribosomal RNA, ... Authors: Fluegel, T, Schacherl, M. Deposit date: 2023-11-10 Release date: 2024-03-06 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.28 Å) Cite: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nat Commun, 15, 2024
8FLA	Human nuclear pre-60S ribosomal subunit (State K1) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
7K00	Structure of the Bacterial Ribosome at 2 Angstrom Resolution Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D. Deposit date: 2020-09-02 Release date: 2020-09-23 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.98 Å) Cite: Structure of the bacterial ribosome at 2 angstrom resolution. Elife, 9, 2020
7JSS	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-15 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JT3	Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-17 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
8FLD	Human nuclear pre-60S ribosomal subunit (State L1) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FL7	Human nuclear pre-60S ribosomal subunit (State J2) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (2.55 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FLE	Human nuclear pre-60S ribosomal subunit (State L2) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.48 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FLB	Human nuclear pre-60S ribosomal subunit (State K2) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (2.55 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
8FL6	Human nuclear pre-60S ribosomal subunit (State J1) Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Vanden Broeck, A, Klinge, S. Deposit date: 2022-12-21 Release date: 2023-07-12 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: Principles of human pre-60 S biogenesis. Science, 381, 2023
7JSZ	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JSW	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
8G6X	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe Descriptor: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminobenzamide, ... Authors: Majumdar, C, Cate, J.H.D. Deposit date: 2023-02-16 Release date: 2023-03-22 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.31 Å) Cite: Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8G6Y	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe Descriptor: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminopyridine-4-carboxamide, ... Authors: Majumdar, C, Cate, J.H.D. Deposit date: 2023-02-16 Release date: 2023-04-05 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.09 Å) Cite: Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
7JT2	70S ribosome stalled on long mRNA with ArfB bound in the A site Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7XNY	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Cheng, J, Beckmann, R. Deposit date: 2022-04-30 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Cancer Discov, 13, 2023

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