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4GKK
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BU of 4gkk by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Cantara, W.A, Murphy IV, F.V, Spears, J.L, Demirci, H, Agris, P.F.
Deposit date:2012-08-11
Release date:2013-06-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Expanded use of sense codons is regulated by modified cytidines in tRNA.
Proc.Natl.Acad.Sci.USA, 110, 2013
4DV1
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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin
Descriptor: 16S rRNA, MAGNESIUM ION, STREPTOMYCIN, ...
Authors:Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G.
Deposit date:2012-02-22
Release date:2013-02-27
Method:X-RAY DIFFRACTION (3.849 Å)
Cite:A structural basis for streptomycin resistance
To be Published
4GKJ
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BU of 4gkj by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Cantara, W.A, Murphy IV, F.V, Spears, J.L, Demirci, H, Agris, P.F.
Deposit date:2012-08-11
Release date:2013-06-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.298 Å)
Cite:Expanded use of sense codons is regulated by modified cytidines in tRNA.
Proc.Natl.Acad.Sci.USA, 110, 2013
7WTM
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BU of 7wtm by Molmil
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E
Descriptor: 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ...
Authors:Cheng, J, La Venuta, G, Lau, B, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:In vitro structural maturation of an early stage pre-40S particle coupled with U3 snoRNA release and central pseudoknot formation.
Nucleic Acids Res., 50, 2022
7WTQ
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Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)
Descriptor: 18S rRNA, 18S rRNA (guanine(1575)-N(7))-methyltransferase, 40S ribosomal protein S1-A, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7WTL
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BU of 7wtl by Molmil
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D
Descriptor: 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ...
Authors:Cheng, J, La Venuta, G, Lau, B, Berninghausen, O, Beckmann, R, Hurt, E.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:In vitro structural maturation of an early stage pre-40S particle coupled with U3 snoRNA release and central pseudoknot formation.
Nucleic Acids Res., 50, 2022
7WTR
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BU of 7wtr by Molmil
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3
Descriptor: 18S rRNA, 18S rRNA (guanine(1575)-N(7))-methyltransferase, 40S ribosomal protein S1-A, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7WTP
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BU of 7wtp by Molmil
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (with Rps2)
Descriptor: 18S rRNA, 18S rRNA (guanine(1575)-N(7))-methyltransferase, 40S ribosomal protein S1-A, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7WTS
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BU of 7wts by Molmil
Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7WTX
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BU of 7wtx by Molmil
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7WTT
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BU of 7wtt by Molmil
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7WTZ
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BU of 7wtz by Molmil
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7WTU
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BU of 7wtu by Molmil
Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Cheng, J, Lau, B, Thoms, M, Ameismeier, M, Berninghausen, O, Hurt, E, Beckmann, R.
Deposit date:2022-02-05
Release date:2022-10-19
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res., 50, 2022
7XNY
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BU of 7xny by Molmil
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Cheng, J, Beckmann, R.
Deposit date:2022-04-30
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia.
Cancer Discov, 13, 2023
7XNX
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BU of 7xnx by Molmil
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Cheng, J, Beckmann, R.
Deposit date:2022-04-30
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia.
Cancer Discov, 13, 2023
6HHQ
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BU of 6hhq by Molmil
Crystal structure of compound C45 bound to the yeast 80S ribosome
Descriptor: (3~{R})-3-[(1~{S})-2-[(1~{S},4~{a}~{R},6~{S},7~{S},8~{a}~{R})-6,7-bis(chloranyl)-5,5,8~{a}-trimethyl-2-methylidene-3,4,4~{a},6,7,8-hexahydro-1~{H}-naphthalen-1-yl]-1-oxidanyl-ethyl]pyrrolidine-2,5-dione, 18S ribosomal RNA, 25S ribosomal RNA, ...
Authors:Pellegrino, S, Vanderwal, C.D, Yusupov, M.
Deposit date:2018-08-28
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.10000038 Å)
Cite:Understanding the role of intermolecular interactions between lissoclimides and the eukaryotic ribosome.
Nucleic Acids Res., 47, 2019
6I7O
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BU of 6i7o by Molmil
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Tesina, P, Cheng, J, Becker, T, Beckmann, R.
Deposit date:2018-11-16
Release date:2019-01-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (5.3 Å)
Cite:Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.
EMBO J., 38, 2019
6IP5
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BU of 6ip5 by Molmil
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T.
Deposit date:2018-11-02
Release date:2019-05-29
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:HCV IRES Captures an Actively Translating 80S Ribosome.
Mol.Cell, 74, 2019
6HCM
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BU of 6hcm by Molmil
Structure of the rabbit collided di-ribosome (stalled monosome)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
Authors:Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S.
Deposit date:2018-08-15
Release date:2018-10-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
Mol. Cell, 72, 2018
6HRM
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BU of 6hrm by Molmil
E. coli 70S d2d8 stapled ribosome
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Schmied, W.H, Tnimov, Z, Uttamapinant, C, Rae, C.D, Fried, S.D, Chin, J.W.
Deposit date:2018-09-27
Release date:2018-12-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Controlling orthogonal ribosome subunit interactions enables evolution of new function.
Nature, 564, 2018
1C05
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BU of 1c05 by Molmil
SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (MINIMIZED AVERAGE STRUCTURE)
Descriptor: RIBOSOMAL PROTEIN S4 DELTA 41
Authors:Markus, M.A, Gerstner, R.B, Draper, D.E, Torchia, D.A.
Deposit date:1999-07-14
Release date:1999-09-29
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases.
J.Mol.Biol., 292, 1999
1C06
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BU of 1c06 by Molmil
SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (ENSEMBLE OF 16 STRUCTURES)
Descriptor: RIBOSOMAL PROTEIN S4 DELTA 41
Authors:Markus, M.A, Gerstner, R.B, Draper, D.E, Torchia, D.A.
Deposit date:1999-07-14
Release date:1999-09-29
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases.
J.Mol.Biol., 292, 1999
6IP8
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BU of 6ip8 by Molmil
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T.
Deposit date:2018-11-02
Release date:2019-05-29
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:HCV IRES Captures an Actively Translating 80S Ribosome.
Mol.Cell, 74, 2019
6HA1
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BU of 6ha1 by Molmil
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Crowe-McAuliffe, C, Graf, M, Huter, P, Abdelshahid, M, Novacek, J, Wilson, D.N.
Deposit date:2018-08-07
Release date:2018-08-29
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6I7V
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BU of 6i7v by Molmil
Ribosomal protein paralogs bL31 and bL36
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ...
Authors:Pulk, A, Cate, J.H.D, Remme, J, Lilleorg, S, Reier, K, Peil, L, Liiv, A, Tammsalu, T.
Deposit date:2018-11-19
Release date:2018-12-05
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase.
Biochimie, 156, 2018

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數據於2024-10-30公開中

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