PDB: 8717 resultsInfo pagesStatus searchChemie searchBIRD

---

4R66	Ternary complex crystal structure of E295K mutant of DNA polymerase Beta Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Beard, W.A, Wilson, S.H. Deposit date: 2014-08-22 Release date: 2014-10-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Substrate-induced DNA Polymerase beta Activation. J.Biol.Chem., 289, 2014
3ADB	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1) Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. Deposit date: 2010-01-18 Release date: 2010-07-28 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
3C2M	Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DGP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3'), ... Authors: Batra, V.K, Beard, W.A, Shock, D.D, Pedersen, L.C, Wilson, S.H. Deposit date: 2008-01-25 Release date: 2008-05-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structures of DNA polymerase beta with active-site mismatches suggest a transient abasic site intermediate during misincorporation. Mol.Cell, 30, 2008
3C2L	Ternary complex of DNA POLYMERASE BETA with a C:DAPCPP mismatch in the active site Descriptor: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, DNA (5'-D(*DCP*DCP*DGP*DAP*DCP*DCP*DGP*DCP*DGP*DCP*DAP*DTP*DCP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DGP*DAP*DTP*DGP*DCP*DGP*DC)-3'), ... Authors: Batra, V.K, Beard, W.A, Shock, D.D, Pedersen, L.C, Wilson, S.H. Deposit date: 2008-01-25 Release date: 2008-05-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structures of DNA polymerase beta with active-site mismatches suggest a transient abasic site intermediate during misincorporation. Mol.Cell, 30, 2008
7UNK	Structure of Importin-4 bound to the H3-H4-ASF1 histone-histone chaperone complex Descriptor: Histone H3, Histone H4, Histone chaperone, ... Authors: Bernardes, N.E, Chook, Y.M, Fung, H.Y.J, Chen, Z, Li, Y. Deposit date: 2022-04-11 Release date: 2022-09-21 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.45 Å) Cite: Structure of IMPORTIN-4 bound to the H3-H4-ASF1 histone-histone chaperone complex. Proc.Natl.Acad.Sci.USA, 119, 2022
3ADC	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2) Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. Deposit date: 2010-01-18 Release date: 2010-07-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
3ADD	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3) Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. Deposit date: 2010-01-18 Release date: 2010-07-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
3ISD	Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', ... Authors: Beard, W.A, Shock, D.D, Batra, V.K, Pedersen, L.C, Wilson, S.H. Deposit date: 2009-08-25 Release date: 2009-09-15 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DNA polymerase beta substrate specificity: side chain modulation of the "A-rule". J.Biol.Chem., 284, 2009
1FHK	NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI Descriptor: RNA (5'-R(*GP*GP*CP*GP*GP*UP*GP*AP*AP*AP*UP*GP*CP*C)-3') Authors: Morosyuk, S.V, Cunningham, P.R, SantaLucia Jr, J. Deposit date: 2000-08-01 Release date: 2001-03-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure. J.Mol.Biol., 307, 2001
6SA0	Ternary complex of Prim-PolC from Mycobacterium smegmatis with 2nt gapped DNA and UpNHpp Descriptor: 1,2-ETHANEDIOL, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, CACODYLATE ION, ... Authors: Brissett, N.C, Doherty, A.J. Deposit date: 2019-07-15 Release date: 2020-11-18 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.209 Å) Cite: Molecular basis for DNA repair synthesis on short gaps by mycobacterial Primase-Polymerase C. Nat Commun, 11, 2020
1ZP2	Structure of the Mediator subunit cyclin C Descriptor: RNA polymerase II holoenzyme cyclin-like subunit Authors: Hoeppner, S, Baumli, S, Cramer, P. Deposit date: 2005-05-16 Release date: 2005-07-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of the Mediator Subunit Cyclin C and its Implications for CDK8 Function. J.Mol.Biol., 350, 2005
8B9K	Cryo-EM structure of MLE in complex with ADP:AlF4 and SL7modUUC RNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, SL7modUUC, ... Authors: Jagtap, P.K.A, Hennig, J. Deposit date: 2022-10-06 Release date: 2023-10-18 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (4.04 Å) Cite: Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
4N5S	Ternary complex structure of Klenow fragment of Taq DNA polymerase I707L mutant (Cs3C KlenTaq) with DNA and ddCTP Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-D(*AP*A*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3', ... Authors: Wu, E.Y. Deposit date: 2013-10-10 Release date: 2015-01-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.67 Å) Cite: A Conservative Isoleucine to Leucine Mutation Causes Major Rearrangements and Cold Sensitivity in KlenTaq1 DNA Polymerase. Biochemistry, 54, 2015
2L41	Nab3 RRM - UCUU complex Descriptor: RNA (5'-R(P*UP*CP*UP*U)-3'), RRM domain from Nuclear polyadenylated RNA-binding protein 3 Authors: Stefl, R, Pergoli, R, Hobor, F, Kubicek, K, Zimmermann, M, Pasulka, J, Hofr, C. Deposit date: 2010-09-28 Release date: 2010-11-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein J.Biol.Chem., 286, 2011
8VFA	Ternary DNA Polymerase Beta bound to DNA containing primer terminal dC base-paired with FapydG Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*CP*(FAP)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Oden, P.N, Ryan, B.J, Freudenthal, B.D. Deposit date: 2023-12-21 Release date: 2024-05-08 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 52, 2024
8VFB	Ternary DNA Polymerase Beta bound to DNA containing primer terminal dA base-paired with FapydG Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*CP*(FAP)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Oden, P.N, Ryan, B.J, Freudenthal, B.D. Deposit date: 2023-12-21 Release date: 2024-05-08 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 52, 2024
8VFD	Ternary DNA Polymerase Beta bound to DNA containing template FapydG incoming TTP analog Descriptor: 1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione, DNA (5'-D(*CP*CP*GP*AP*CP*(FAP)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Oden, P.N, Ryan, B.J, Freudenthal, B.D. Deposit date: 2023-12-21 Release date: 2024-05-08 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Biochemical and structural characterization of Fapy•dG replication by Human DNA polymerase beta. Nucleic Acids Res., 52, 2024
4L1P	Crystal Structure of Human Rtf1 Plus3 domain Descriptor: GLYCEROL, RNA polymerase-associated protein RTF1 homolog Authors: Wier, A.D, Heroux, A, VanDemark, A.P. Deposit date: 2013-06-03 Release date: 2013-10-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin. Proc.Natl.Acad.Sci.USA, 110, 2013
4L1U	Crystal Structure of Human Rtf1 Plus3 Domain in Complex with Spt5 CTR Phosphopeptide Descriptor: GLYCEROL, RNA polymerase-associated protein RTF1 homolog, SULFATE ION, ... Authors: Wier, A.D, Heroux, A, VanDemark, A.P. Deposit date: 2013-06-03 Release date: 2013-10-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.424 Å) Cite: Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin. Proc.Natl.Acad.Sci.USA, 110, 2013
3PKY	Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA, UTP and Manganese. Descriptor: DNA 5'-D(*G*CP*CP*GP*CP*AP*AP*CP*GP*CP*AP*CP*G)-3', DNA 5'-D(P*GP*CP*GP*GP*C)-3', MANGANESE (II) ION, ... Authors: Brissett, N.C, Fox, G.C, Pitcher, R.S, Doherty, A.J. Deposit date: 2010-11-12 Release date: 2011-02-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure of a Preternary Complex Involving a Prokaryotic NHEJ DNA Polymerase. Mol.Cell, 41, 2011
4M8O	TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING dATP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2-AMINOETHANESULFONIC ACID, CHLORIDE ION, ... Authors: Sauer-Eriksson, A.E, Hogg, M, Osterman, P, Johansson, E. Deposit date: 2013-08-13 Release date: 2013-11-27 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for processive DNA synthesis by yeast DNA polymerase epsilon. Nat.Struct.Mol.Biol., 21, 2014
1O4X	TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT Descriptor: 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3', Transcription factor SOX-2, ... Authors: Clore, G.M, Williams, D.C. Deposit date: 2003-07-17 Release date: 2004-01-27 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. J.Biol.Chem., 279, 2004
1HKN	A complex between acidic fibroblast growth factor and 5-amino-2-naphthalenesulfonate Descriptor: 5-AMINO-NAPHTALENE-2-MONOSULFONATE, HEPARIN-BINDING GROWTH FACTOR 1 Authors: Fernandez-Tornero, C, Lozano, R.M, Gimenez-Gallego, G, Romero, A. Deposit date: 2003-03-10 Release date: 2004-03-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Leads for Development of New Naphthalenesulfonate Derivatives with Enhanced Antiangiogenic Activity: Crystal Structure of Acidic Fibroblast Growth Factor in Complex with 5-Amino-2-Naphthalenesulfonate J.Biol.Chem., 278, 2003
3QLM	Crystal structure of porcine pancreatic phospholipase A2 in complex with n-hexadecanoic acid Descriptor: CALCIUM ION, PALMITIC ACID, Phospholipase A2, ... Authors: Aparna, V, Dileep, K.V, Karthe, P, Mandal, P.K, Sadasivan, C, Haridas, M. Deposit date: 2011-02-03 Release date: 2011-04-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Anti-inflammatory property of n-hexadecanoic acid: Structural evidence and Kinetic assessment. Chem.Biol.Drug Des., 2012
4K0R	Crystal structure of mouse Cryptochrome 1 Descriptor: Cryptochrome-1 Authors: Czarna, A, Wolf, E. Deposit date: 2013-04-04 Release date: 2013-06-26 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structures of Drosophila cryptochrome and mouse cryptochrome1 provide insight into circadian function. Cell(Cambridge,Mass.), 153, 2013

<45464748495051525354555657585960>