PDB: 1867 resultsInfo pagesStatus searchChemie searchBIRD

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7V27	RBD/XG005 local refinement Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, XG005-VH, ... Authors: Zhan, W.Q, Zhang, X, Sun, L, Chen, Z.G. Deposit date: 2021-08-07 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (4.18 Å) Cite: RBD/XG005 local refinement To Be Published
7UPX	Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, SP1-77 Fab heavy chain, SP1-77 Fab light chain, ... Authors: Zhang, J, Luo, S, Kreutzberger, A, Kirchhausen, T, Chen, B, Haynes, B, Alt, F. Deposit date: 2022-04-18 Release date: 2022-08-10 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: An antibody from single human V H -rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion. Sci Immunol, 7, 2022
7UPY	An antibody from single human VH-rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhang, J, Luo, S, Kreutzberger, A, Kirchhausen, T, Chen, B, Haynes, B, Alt, F. Deposit date: 2022-04-18 Release date: 2022-08-10 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: An antibody from single human V H -rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion. Sci Immunol, 7, 2022
7V20	CryoEM structure of del68-76/del679-688 prefusion-stabilized spike Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Du, S, Xiao, J. Deposit date: 2021-08-07 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: CryoEM structure of del68-76/del679-688 prefusion-stabilized spike To Be Published
7V22	Local CryoEM structure del68-76/del679-688 prefusion-stabilized spike Descriptor: Spike glycoprotein Authors: Du, S, Xiao, J. Deposit date: 2021-08-07 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (3.38 Å) Cite: Local CryoEM structure del68-76/del679-688 prefusion-stabilized spike To Be Published
7V23	CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Du, S, Xiao, J. Deposit date: 2021-08-07 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 To Be Published
7UPW	Three RBD-down state of SARS-CoV-2 D614G spike in complex with the SP1-77 neutralizing antibody Fab fragment Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhang, J, Luo, S, Kreutzberger, A, Kirchhausen, T, Chen, B, Haynes, B, Alt, F. Deposit date: 2022-04-18 Release date: 2022-08-10 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: An antibody from single human V H -rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion. Sci Immunol, 7, 2022
7V24	Local CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 Descriptor: Spike glycoprotein, the heavy chain of N12-9 Fab, the lignt chain of N12-9 Fab Authors: Du, S, Xiao, J. Deposit date: 2021-08-07 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: Local CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 To Be Published
7UZ9	Structure of the SARS-CoV-2 S 6P trimer in complex with the mouse antibody Fab fragment, M8a-34 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, M8a-34 Fab heavy chain, M8a-34 Fab light chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZA	Structure of the SARS-CoV-2 S 6P trimer in complex with the mouse antibody Fab fragment, HSW-1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HSW-1 Fab heavy chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZ5	Structure of the SARS-CoV-2 S 6P trimer in complex with the mouse antibody Fab fragment, M8a-6 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, M8a-6 Fab heavy chain, M8a-6 Fab light chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZ6	Structure of the SARS-CoV-2 S 6P trimer in complex with the mouse antibody Fab fragment, M8a-28 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, M8a-28 Fab heavy chain, M8a-28 Fab light chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZ4	Structure of the SARS-CoV-2 S 6P trimer in complex with the mouse antibody Fab fragment, M8a-3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, M8a-3 Fab heavy chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZB	Structure of the SARS-CoV-2 S S1 doamin in complex with the mouse antibody Fab fragment, HSW-2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HSW-2 Fab heavy chain, HSW-2 Fab light chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZ7	Structure of the SARS-CoV-2 S 6P trimer in complex with the mouse antibody Fab fragment, M8a-31 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, M8a-31 Fab heavy chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2022-12-07 Last modified: 2022-12-28 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZC	Structure of the SARS-CoV-2 RBD in complex with the mouse antibody Fab fragment, M8a-34 Descriptor: M8a-34 Fab heavy chain, M8a-34 Fab light chain, Spike protein S1, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2023-01-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UZD	Structure of the SARS-CoV-2 RBD in complex with the mouse antibody Fab fragment, HSW-2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HSW-2 Fab heavy chain, HSW-2 Fab light chain, ... Authors: Fan, C, Bjorkman, P.J. Deposit date: 2022-05-08 Release date: 2023-01-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3 Å) Cite: Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55, 2022
7UL1	Crystal structure of SARS-CoV-2 RBD in complex with the neutralizing IGHV3-53-encoded antibody EH3 isolated from a nonvaccinated pediatric patient Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of EH3, Light chain of EH3, ... Authors: Chen, Y, Tolbert, W.D, Pazgier, M. Deposit date: 2022-04-03 Release date: 2023-03-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Molecular basis for antiviral activity of two pediatric neutralizing antibodies targeting SARS-CoV-2 Spike RBD. Iscience, 26, 2023
7UL0	Crystal structure of SARS-CoV-2 RBD in complex with the ridge-binding nAb EH8 isolated from a nonvaccinated pediatric patient Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of EH8, ... Authors: Chen, Y, Tolbert, W.D, Bai, X, Pazgier, M. Deposit date: 2022-04-03 Release date: 2023-03-08 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Molecular basis for antiviral activity of two pediatric neutralizing antibodies targeting SARS-CoV-2 Spike RBD. Iscience, 26, 2023
7UKM	Cryo-EM structure of Antibody 12-19 in complex with prefusion SARS-CoV-2 Spike glycoprotein Descriptor: 12-19 Fab Heavy Chain, 12-19 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Casner, R.G, Shapiro, L. Deposit date: 2022-04-01 Release date: 2023-10-04 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Structure and Neutralization of two quaternary SARS-CoV-2 omicron antibodies To Be Published
7UKL	Cryo-EM structure of Antibody 12-16 in complex with prefusion SARS-CoV-2 Spike glycoprotein Descriptor: 12-16 Fab Heavy Chain, 12-16 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Casner, R.G, Shapiro, L. Deposit date: 2022-04-01 Release date: 2023-10-04 Last modified: 2023-10-25 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Antibodies targeting a quaternary site on SARS-CoV-2 spike glycoprotein prevent viral receptor engagement by conformational locking. Immunity, 56, 2023
7UHC	SARS-CoV-2 spike in complex with AHB2-2GS-SB175 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Multivalent miniprotein inhibitor AHB2-2GS-SB175, ... Authors: Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D. Deposit date: 2022-03-26 Release date: 2022-06-08 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Sci Transl Med, 14, 2022
7V76	Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, one RBD-up conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-21 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), uncleavable form, one RBD-up conformation To Be Published
7V7T	Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), two RBD-up conformation 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-21 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), two RBD-up conformation 1 To Be Published
7V8C	Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), Cleavable form, one RBD-up conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-22 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Beta variant (B.1.351), Cleavable form, one RBD-up conformation To Be Published

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