PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

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4OWS	Anthranilate phosphoribosyl transferase from Mycobacterium tuberculosis in complex with 4-methylanthranilate, PRPP and Magnesium Descriptor: 2-azanyl-4-methyl-benzoic acid, Anthranilate phosphoribosyltransferase, IMIDAZOLE, ... Authors: Castell, A, Cookson, T.V.M, Short, F.L, Lott, J.S. Deposit date: 2014-02-03 Release date: 2014-04-23 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Alternative substrates reveal catalytic cycle and key binding events in the reaction catalysed by anthranilate phosphoribosyltransferase from Mycobacterium tuberculosis. Biochem.J., 461, 2014
1UUE	a-SPECTRIN SH3 DOMAIN (V44T, D48G MUTANT) Descriptor: SPECTRIN ALPHA CHAIN Authors: Vega, M.C, Fernandez, A, Wilmanns, M, Serrano, L. Deposit date: 2003-12-18 Release date: 2004-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Solvation in Protein Folding Analysis: Combination of Theoretical and Experimental Approaches Proc.Natl.Acad.Sci.USA, 101, 2004
1SYC	ENGINEERING ALTERNATIVE BETA-TURN TYPES IN STAPHYLOCOCCAL NUCLEASE Descriptor: STAPHYLOCOCCAL NUCLEASE Authors: Hynes, T.R, Hodel, A, Fox, R.O. Deposit date: 1994-01-07 Release date: 1994-07-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Engineering alternative beta-turn types in staphylococcal nuclease. Biochemistry, 33, 1994
4IZJ	Crystal structure of yellowtail ascites virus VP4 protease with a wild-type active site reveals acyl-enzyme complexes and product complexes. Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, MAGNESIUM ION, ... Authors: Paetzel, M, Chung, I.Y.W. Deposit date: 2013-01-30 Release date: 2013-02-27 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structures of Yellowtail Ascites Virus VP4 Protease: TRAPPING AN INTERNAL CLEAVAGE SITE TRANS ACYL-ENZYME COMPLEX IN A NATIVE SER/LYS DYAD ACTIVE SITE. J.Biol.Chem., 288, 2013
5T4J	PLP and GABA Trigger GabR-Mediated Transcription Regulation in Bacillus subsidies via External Aldimine Formation Descriptor: GAMMA-AMINO-BUTANOIC ACID, HTH-type transcriptional regulatory protein GabR, PYRIDOXAL-5'-PHOSPHATE Authors: Wu, R, Sanishvili, R, Belitsky, B.R, Juncosa, J.I, Le, H.V, Lehrer, H.J.S, Farley, M, Silverman, R.B, Petsko, G.A, Ringe, D, Liu, D. Deposit date: 2016-08-29 Release date: 2017-03-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.231 Å) Cite: PLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4IZK	Crystal structure of yellowtail ascites virus VP4 protease active site mutant (K674A) reveals both an acyl-enzyme complex and an empty active site Descriptor: BETA-MERCAPTOETHANOL, MAGNESIUM ION, Yellowtail Ascites Virus (YAV) VP4 protease Authors: Paetzel, M, Chung, I.Y.W. Deposit date: 2013-01-30 Release date: 2013-02-27 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures of Yellowtail Ascites Virus VP4 Protease: TRAPPING AN INTERNAL CLEAVAGE SITE TRANS ACYL-ENZYME COMPLEX IN A NATIVE SER/LYS DYAD ACTIVE SITE. J.Biol.Chem., 288, 2013
5T4K	PLP and GABA Trigger GabR-Mediated Transcription Regulation in Bacillus subsidies via External Aldimine Formation Descriptor: (4S)-5-fluoro-4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid, HTH-type transcriptional regulatory protein GabR Authors: Wu, R, Sanishvili, R, Belitsky, B.R, Juncosa, J.I, Le, H.V, Lehrer, H.J.S, Farley, M, Silverman, R.B, Petsko, G.A, Ringe, D, Liu, D. Deposit date: 2016-08-29 Release date: 2017-03-29 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.245 Å) Cite: PLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5T4L	PLP and GABA Trigger GabR-Mediated Transcription Regulation in Bacillus subsidies via External Aldimine Formation Descriptor: (4R)-4-amino-6-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}hexanoic acid, Aspartate aminotransferase Authors: Wu, R, Sanishvili, R, Belitsky, B.R, Juncosa, J.I, Le, H.V, Lehrer, H.J.S, Farley, M, Silverman, R.B, Petsko, G.A, Ringe, D, Liu, D. Deposit date: 2016-08-29 Release date: 2017-03-29 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.53 Å) Cite: PLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1SYG	ENGINEERING ALTERNATIVE BETA-TURN TYPES IN STAPHYLOCOCCAL NUCLEASE Descriptor: STAPHYLOCOCCAL NUCLEASE Authors: Hynes, T.R, Hodel, A, Fox, R.O. Deposit date: 1994-01-07 Release date: 1994-07-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Engineering alternative beta-turn types in staphylococcal nuclease. Biochemistry, 33, 1994
2OK9	PrTX-I-BPB Descriptor: ISOPROPYL ALCOHOL, Phospholipase A2 homolog 1, p-Bromophenacyl bromide Authors: Marchi-Salvador, D.P, Fernandes, C.A.H, Soares, A.M, Fontes, M.R. Deposit date: 2007-01-16 Release date: 2008-09-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Crystal structure of a phospholipase A(2) homolog complexed with p-bromophenacyl bromide reveals important structural changes associated with the inhibition of myotoxic activity. Biochim.Biophys.Acta, 1794, 2009
1SYD	ENGINEERING ALTERNATIVE BETA-TURN TYPES IN STAPHYLOCOCCAL NUCLEASE Descriptor: CALCIUM ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE Authors: Hynes, T.R, Hodel, A, Fox, R.O. Deposit date: 1994-01-07 Release date: 1994-07-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Engineering alternative beta-turn types in staphylococcal nuclease. Biochemistry, 33, 1994
4OWO	Anthranilate phosphoribosyl transferase from Mycobacterium tuberculosis in complex with 6-fluoroanthranilate, PRPP and Magnesium Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 2-azanyl-6-fluoranyl-benzoic acid, Anthranilate phosphoribosyltransferase, ... Authors: Castell, A, Cookson, T.V.M, Short, F.L, Lott, J.S. Deposit date: 2014-02-02 Release date: 2014-04-23 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Alternative substrates reveal catalytic cycle and key binding events in the reaction catalysed by anthranilate phosphoribosyltransferase from Mycobacterium tuberculosis. Biochem.J., 461, 2014
7DFR	CRYSTAL STRUCTURES OF ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE. THE NADP+ HOLOENZYME AND THE FOLATE(DOT)NADP+ TERNARY COMPLEX. SUBSTRATE BINDING AND A MODEL FOR THE TRANSITION STATE Descriptor: DIHYDROFOLATE REDUCTASE, FOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Bystroff, C, Oatley, S.J, Kraut, J. Deposit date: 1988-10-21 Release date: 1990-07-15 Last modified: 2017-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures of Escherichia coli dihydrofolate reductase: the NADP+ holoenzyme and the folate.NADP+ ternary complex. Substrate binding and a model for the transition state. Biochemistry, 29, 1990
6PI9	Crystal structure of 16S rRNA methyltransferase RmtF in complex with S-Adenosyl-L-homocysteine Descriptor: 16S rRNA (guanine(1405)-N(7))-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE Authors: Stogios, P.J, Kim, Y, Evdokimova, E, Di Leo, R, Semper, C, Savchenko, A, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2019-06-26 Release date: 2019-07-10 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of 16S rRNA methylase RmtF in complex with S-Adenosyl-L-homocysteine To be Published
2RSM	Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65 (ICT2) Descriptor: Probable peptide chain release factor C12orf65 homolog, mitochondrial Authors: Enomoto, M, Tochio, N, Tomizawa, T, Koshiba, S, Guntert, P, Kigawa, T, Yokoyama, S, Nameki, N. Deposit date: 2012-03-28 Release date: 2012-08-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65. Proteins, 2012
4ELY	CCDBVFI:GYRA14EC Descriptor: CHLORIDE ION, CcdB, DNA gyrase subunit A, ... Authors: De Jonge, N, Simic, R, Buts, L, Haesaerts, S, Roelants, K, Garcia-Pino, A, Sterckx, Y, De Greve, H, Lah, J, Loris, R. Deposit date: 2012-04-11 Release date: 2012-05-30 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.932 Å) Cite: Alternative interactions define gyrase specificity in the CcdB family. Mol.Microbiol., 84, 2012
4EPA	The crystal structure of the ferric yersiniabactin uptake receptor FyuA from Yersinia pestis Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Pesticin receptor Authors: Lukacik, P, Barnard, T.J, Buchanan, S.K. Deposit date: 2012-04-17 Release date: 2012-06-20 Last modified: 2012-07-04 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural engineering of a phage lysin that targets Gram-negative pathogens. Proc.Natl.Acad.Sci.USA, 109, 2012
2VDV	Structure of trm8, m7G methylation enzyme Descriptor: S-ADENOSYLMETHIONINE, TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE Authors: Leulliot, N, Chaillet, M, Durand, D, Ulryck, N, Blondeau, K, Van Tilbeurgh, H. Deposit date: 2007-10-11 Release date: 2007-12-18 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the Yeast tRNA M7G Methylation Complex. Structure, 16, 2008
5D1N	Crystal structure of the 16S rRNA (adenine(1408)-N(1))-methyltransferase with its reaction by-product SAH from Catenulisporales acidiphilia Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, Uncharacterized protein Authors: Witek, M.A, Conn, G.L. Deposit date: 2015-08-04 Release date: 2016-04-20 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.713 Å) Cite: Functional dichotomy in the 16S rRNA (m1A1408) methyltransferase family and control of catalytic activity via a novel tryptophan mediated loop reorganization. Nucleic Acids Res., 44, 2016
4EPF	The crystal structure of pesticin from Yersinia pestis Descriptor: Pesticin Authors: Lukacik, P, Barnard, T.J, Buchanan, S.K. Deposit date: 2012-04-17 Release date: 2012-06-20 Last modified: 2012-07-04 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Structural engineering of a phage lysin that targets Gram-negative pathogens. Proc.Natl.Acad.Sci.USA, 109, 2012
1L77	DESIGN AND STRUCTURAL ANALYSIS OF ALTERNATIVE HYDROPHOBIC CORE PACKING ARRANGEMENTS IN BACTERIOPHAGE T4 LYSOZYME Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME Authors: Hurley, J.H, Matthews, B.W. Deposit date: 1991-11-12 Release date: 1993-04-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. J.Mol.Biol., 224, 1992
1L80	DESIGN AND STRUCTURAL ANALYSIS OF ALTERNATIVE HYDROPHOBIC CORE PACKING ARRANGEMENTS IN BACTERIOPHAGE T4 LYSOZYME Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME Authors: Hurley, J.H, Matthews, B.W. Deposit date: 1991-11-12 Release date: 1993-04-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. J.Mol.Biol., 224, 1992
5D1H	Crystal structure of the 16S rRNA (adenine(1408)-N(1))-methyltransferase W203A mutant from Catenulisporales acidiphilia Descriptor: Uncharacterized protein Authors: Witek, M.A, Conn, G.L. Deposit date: 2015-08-04 Release date: 2016-04-20 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.803 Å) Cite: Functional dichotomy in the 16S rRNA (m1A1408) methyltransferase family and control of catalytic activity via a novel tryptophan mediated loop reorganization. Nucleic Acids Res., 44, 2016
2PYB	Napa protein from borrelia burgdorferi Descriptor: FE (III) ION, Neutrophil activating protein Authors: Zanotti, G, Papinutto, E, De Bernard, M. Deposit date: 2007-05-16 Release date: 2008-08-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure and immunomodulatory property relationship in NapA of Borrelia burgdorferi. Biochim.Biophys.Acta, 1804, 2010
5D9F	Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds Descriptor: 6-{[(1R,3S)-3-phenylcyclopentyl]amino}pyridine-3-carboxamide, tRNA (guanine-N(1)-)-methyltransferase Authors: Elkins, P.A, Bonnette, W.G, Madauss, K.P. Deposit date: 2015-08-18 Release date: 2016-08-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds To be published

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