2PYB

Napa protein from borrelia burgdorferi

Summary for 2PYB

Related1JI4 1JI5 1JIG 1DPS
DescriptorNeutrophil activating protein, FE (III) ION (3 entities in total)
Functional Keywordsferritin, dps, four-helix bundle, metal transport
Biological sourceBorrelia burgdorferi
Total number of polymer chains4
Total molecular weight71544.75
Authors
Zanotti, G.,Papinutto, E.,De Bernard, M. (deposition date: 2007-05-16, release date: 2008-08-12, Last modification date: 2016-10-26)
Primary citation
Codolo, G.,Papinutto, E.,Polenghi, A.,D'Elios, M.M.,Zanotti, G.,de Bernard, M.
Structure and immunomodulatory property relationship in NapA of Borrelia burgdorferi.
Biochim.Biophys.Acta, 1804:2191-2197, 2010
PubMed: 20851780 (PDB entries with the same primary citation)
DOI: 10.1016/j.bbapap.2010.09.004
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.6 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.2226611.1%14.3%2.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 2pyb
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Molmil generated image of 2pyb
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Molmil generated image of 2pyb
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 2pyb
no rotation
Molmil generated image of 2pyb
rotated about x axis by 90°
Molmil generated image of 2pyb
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2pyb.pdb1.gz [298.73 KB])