PDB: 73420 resultsInfo pagesStatus searchChemie searchBIRD

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2R7F	Crystal structure of ribonuclease II family protein from Deinococcus radiodurans, hexagonal crystal form. NorthEast Structural Genomics target DrR63 Descriptor: Ribonuclease II family protein Authors: Seetharaman, J, Neely, H, Forouhar, F, Wang, D, Fang, Y, Cunningham, K, Ma, L.-C, Xia, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2007-09-07 Release date: 2007-10-02 Last modified: 2018-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The Structure and Enzymatic Properties of a Novel RNase II Family Enzyme from Deinococcus radiodurans. J.Mol.Biol., 415, 2012
5T9P	Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate Descriptor: CHLORIDE ION, Ribosome biogenesis protein 15, SULFATE ION Authors: Zhang, J, Gonzalez, E.L, Hall, M.T.T. Deposit date: 2016-09-09 Release date: 2016-11-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate. Nucleic Acids Res., 45, 2017
6KLH	Dimeric structure of Machupo virus polymerase bound to vRNA promoter Descriptor: MANGANESE (II) ION, RNA (5'-R(*GP*CP*CP*UP*AP*GP*GP*AP*UP*CP*CP*AP*CP*UP*GP*UP*GP*CP*G)-3'), RNA-directed RNA polymerase L, ... Authors: Peng, R, Xu, X, Jing, J, Peng, Q, Gao, G.F, Shi, Y. Deposit date: 2019-07-30 Release date: 2020-03-18 Last modified: 2021-12-08 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural insight into arenavirus replication machinery. Nature, 579, 2020
7ELH	In situ structure of transcriptional enzyme complex and capsid shell protein of mammalian reovirus at initiation state Descriptor: Lambda 1, Minor core protein mu2, PHOSPHATE ION, ... Authors: Zhou, Z.H, Pan, M. Deposit date: 2021-04-11 Release date: 2021-10-20 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins. Nat Commun, 12, 2021
2F96	2.1 A crystal structure of Pseudomonas aeruginosa rnase T (Ribonuclease T) Descriptor: MAGNESIUM ION, Ribonuclease T Authors: Zheng, H, Chruszcz, M, Cymborowski, M, Wang, Y, Gorodichtchenskaia, E, Skarina, T, Guthrie, J, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG) Deposit date: 2005-12-05 Release date: 2006-02-14 Last modified: 2022-04-13 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Crystal Structure of RNase T, an Exoribonuclease Involved in tRNA Maturation and End Turnover. Structure, 15, 2007
2KG1	Structure of the third qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA Descriptor: 5'-R(*AP*GP*GP*GP*AP*U)-3', Heterogeneous nuclear ribonucleoprotein F Authors: Allain, F.H.T, Dominguez, C. Deposit date: 2009-03-02 Release date: 2010-06-09 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat.Struct.Mol.Biol., 17, 2010
2KG0	Structure of the second qRRM domain of hnRNP F in complex with a AGGGAU G-tract RNA Descriptor: 5'-R(*AP*GP*GP*GP*AP*U)-3', Heterogeneous nuclear ribonucleoprotein F Authors: Allain, F.H.T, Dominguez, C. Deposit date: 2009-03-02 Release date: 2010-06-09 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat.Struct.Mol.Biol., 17, 2010
8C5C	microtubule decorated with tubulin oligomers in presence of APC C-terminal domain. (here only map corresponding to the 13-pf microtubule is represented) Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Serre, L, Arnal, I. Deposit date: 2023-01-06 Release date: 2023-01-25 Last modified: 2023-02-01 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: The mitotic role of adenomatous polyposis coli requires its bilateral interaction with tubulin and microtubules. J.Cell.Sci., 136, 2023
6W15	Crystal structure of tRNA (guanine-N(1)-)-methyltransferase with bound SAH from Mycobacterium smegmatis Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine-N(1)-)-methyltransferase Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2020-03-03 Release date: 2020-05-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of tRNA (guanine-N(1)-)-methyltransferase with bound SAH from Mycobacterium smegmatis to be published
7CSZ	Crystal structure of the N-terminal tandem RRM domains of RBM45 in complex with single-stranded DNA Descriptor: DNA (5'-D(*CP*GP*AP*CP*GP*GP*GP*AP*CP*GP*C)-3'), RNA-binding protein 45 Authors: Chen, X, Yang, Z, Wang, W, Wang, M. Deposit date: 2020-08-17 Release date: 2021-02-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for RNA recognition by the N-terminal tandem RRM domains of human RBM45. Nucleic Acids Res., 49, 2021
2DIW	Solution structure of the RPR domain of Putative RNA-binding protein 16 Descriptor: Putative RNA-binding protein 16 Authors: Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-03-30 Release date: 2006-09-30 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the RPR domain of Putative RNA-binding protein 16 To be Published
7V02	Staphylococcus epidermidis RP62A CRISPR short effector complex Descriptor: CRISPR system Cms endoribonuclease Csm3, CRISPR system Cms protein Csm2, CRISPR system Cms protein Csm4, ... Authors: Smith, E.M, Ferrell, S.H, Tokars, V.L, Mondragon, A. Deposit date: 2022-05-09 Release date: 2022-07-06 Last modified: 2022-08-17 Method: ELECTRON MICROSCOPY (4.97 Å) Cite: Structures of an active type III-A CRISPR effector complex. Structure, 30, 2022
7UZZ	Staphylococcus epidermidis RP62a CRISPR tall effector complex Descriptor: CRISPR system Cms endoribonuclease Csm3, CRISPR system Cms protein Csm2, CRISPR system Cms protein Csm4, ... Authors: Smith, E.M, Ferrell, S.H, Tokars, V.L, Mondragon, A. Deposit date: 2022-05-09 Release date: 2022-07-06 Last modified: 2022-08-17 Method: ELECTRON MICROSCOPY (4.45 Å) Cite: Structures of an active type III-A CRISPR effector complex. Structure, 30, 2022
7RDX	SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - open class Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ... Authors: Chen, J, Malone, B, Campbell, E.A, Darst, S.A. Deposit date: 2021-07-12 Release date: 2021-11-24 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol., 29, 2022
7RDZ	SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - apo class Descriptor: ADENOSINE-5'-DIPHOSPHATE, Helicase, MAGNESIUM ION, ... Authors: Chen, J, Malone, B, Campbell, E.A, Darst, S.A. Deposit date: 2021-07-12 Release date: 2021-11-24 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol., 29, 2022
7RE3	SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimer Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ... Authors: Chen, J, Malone, B, Campbell, E.A, Darst, S.A. Deposit date: 2021-07-12 Release date: 2021-11-24 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.33 Å) Cite: Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol., 29, 2022
6O8W	Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01 Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Jogl, G, Khayat, R. Deposit date: 2019-03-12 Release date: 2020-09-23 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.53 Å) Cite: Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep, 10, 2020
7RE1	SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC (composite) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ... Authors: Chen, J, Malone, B, Campbell, E.A, Darst, S.A. Deposit date: 2021-07-12 Release date: 2021-12-01 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol., 29, 2022
7RE2	SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(1)-RTC Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ... Authors: Chen, J, Malone, B, Campbell, E.A, Darst, S.A. Deposit date: 2021-07-12 Release date: 2021-12-01 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol., 29, 2022
7RDY	SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - engaged class Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ... Authors: Chen, J, Malone, B, Campbell, E.A, Darst, S.A. Deposit date: 2021-07-12 Release date: 2021-12-01 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol., 29, 2022
7RE0	SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - swiveled class Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Helicase, ... Authors: Chen, J, Malone, B, Campbell, E.A, Darst, S.A. Deposit date: 2021-07-12 Release date: 2021-12-01 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Nat.Struct.Mol.Biol., 29, 2022
8PFJ	fully recruited RfaH bound to E. coli transcription complex paused at ops site (not fully complementary scaffold; alternative state of RfaH) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. Deposit date: 2023-06-16 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
1XBP	Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ... Authors: Schluenzen, F, Pyetan, E, Fucini, P, Yonath, A, Harms, J.M. Deposit date: 2004-08-31 Release date: 2005-03-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Inhibition of peptide bond formation by pleuromutilins: the structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with tiamulin. Mol.Microbiol., 54, 2004
7BMK	ATP-Competitive Partial Antagonists-'PAIR's-Rheostatically Modulate IRE1alpha's Kinase Helix-alphaC to Segregate its RNase-Mediated Biological Outputs Descriptor: 1,2-ETHANEDIOL, 2,2,2-tris(fluoranyl)-~{N}-[4-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxynaphthalen-1-yl]ethanesulfonamide, DI(HYDROXYETHYL)ETHER, ... Authors: Feldman, H.C, Ghosh, R, Auyeung, V, Mueller, J.L, Vidadala, V.N, Olivier, A, Backes, B.J, Zikherman, J, Papa, F.R, Maly, D.J. Deposit date: 2021-01-20 Release date: 2021-09-29 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.85 Å) Cite: ATP-competitive partial antagonists of the IRE1 alpha RNase segregate outputs of the UPR. Nat.Chem.Biol., 17, 2021
8PEN	fully recruited RfaH bound to E. coli transcription complex paused at ops site (alternative state of RfaH) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. Deposit date: 2023-06-14 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024

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