PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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5M1N	Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Manganese Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE (II) ION, Phage terminase large subunit, ... Authors: Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A. Deposit date: 2016-10-09 Release date: 2016-10-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism. Nucleic Acids Res., 45, 2017
1RM1	Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex Descriptor: 5'-D(*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*AP*TP*AP*AP*AP*AP*CP*G)-3', 5'-D(P*CP*GP*TP*TP*TP*TP*AP*TP*AP*TP*CP*GP*AP*TP*CP*GP*AP*T)-3', TATA-box binding protein, ... Authors: Jin, X, Gewirth, D.T, Geiger, J.H. Deposit date: 2003-11-26 Release date: 2005-07-26 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.5 Å) Cite: High Resolution Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex TO BE PUBLISHED
5C8E	Crystal structure of Thermus thermophilus CarH bound to adenosylcobalamin and a 26-bp DNA segment Descriptor: 26-mer DNA segment containing the CarH operator sequence (antisense strand), 26-mer DNA segment containing the CarH operator sequence (sense strand), 5'-DEOXYADENOSINE, ... Authors: Jost, M, Drennan, C.L. Deposit date: 2015-06-25 Release date: 2015-09-30 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.89 Å) Cite: Structural basis for gene regulation by a B12-dependent photoreceptor. Nature, 526, 2015
2XY6	Crystal structure of a salicylic aldehyde basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-D(*AP*GP*GP*GP*AP*SAYP*GP*GP*TP*CP)-3', ... Authors: Kaul, C, Mueller, M, Wagner, M, Schneider, S, Carell, T. Deposit date: 2010-11-15 Release date: 2011-07-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Reversible Bond Formation Enables the Replication and Amplification of a Crosslinking Salen Complex as an Orthogonal Base Pair. Nature Chem., 3, 2011
4A0L	Structure of DDB1-DDB2-CUL4B-RBX1 bound to a 12 bp abasic site containing DNA-duplex Descriptor: 12 BP DNA DUPLEX, 12 BP THF CONTAINING DNA DUPLEX, CULLIN-4B, ... Authors: Fischer, E.S, Scrima, A, Gut, H, Thoma, N.H. Deposit date: 2011-09-09 Release date: 2011-12-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (7.4 Å) Cite: The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation. Cell(Cambridge,Mass.), 147, 2011
2XY5	Crystal structure of an artificial salen-copper basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 5'-D(*AP*GP*GP*GP*AP*SAYP*GP*GP*TP*CP)-3', 5'-D(*GP*AP*CP*CP*SAYP*TP*CP*CP*CP*TP)-3', ... Authors: Kaul, C, Mueller, M, Wagner, M, Schneider, S, Carell, T. Deposit date: 2010-11-15 Release date: 2011-07-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Reversible Bond Formation Enables the Replication and Amplification of a Crosslinking Salen Complex as an Orthogonal Base Pair. Nature Chem., 3, 2011
2XO7	Crystal structure of a dA:O-allylhydroxylamine-dC basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus Descriptor: 5'-D(*AP*GP*GP*AP*AP*TP*GP*GP*TP*CP*A)-3', 5'-D(*GP*AP*CP*CP*AP*TP*47C*CP*CP*T)-3', DNA POLYMERASE I, ... Authors: Muenzel, M, Lercher, L, Mueller, M, Carell, T. Deposit date: 2010-08-10 Release date: 2010-09-15 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Chemical Discrimination between Dc and 5Medc Via Their Hydroxylamine Adducts Nucleic Acids Res., 38, 2010
5M1K	Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Magnesium Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Phage terminase large subunit, ... Authors: Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A. Deposit date: 2016-10-09 Release date: 2016-10-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism. Nucleic Acids Res., 45, 2017
5M1P	Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Calcium Descriptor: CALCIUM ION, Terminase large subunit Authors: Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A. Deposit date: 2016-10-09 Release date: 2016-10-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism. Nucleic Acids Res., 45, 2017
7BM8	Crystal structure of the C-terminally truncated chromosome-partitioning protein ParB from Caulobacter crescentus complexed with CTP-gamma-S Descriptor: CYTIDINE-5'-TRIPHOSPHATE, Chromosome-partitioning protein ParB, MAGNESIUM ION Authors: Jalal, A.S, Tran, N.T, Stevenson, C.E.M, Lawson, D.M, Le, T.B.K. Deposit date: 2021-01-19 Release date: 2021-04-28 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.73 Å) Cite: A CTP-dependent gating mechanism enables ParB spreading on DNA. Elife, 10, 2021
8FF4	Cryo-EM structure of Cascade-DNA-TniQ-TnsC complex (composite) in type I-B CAST system Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Non-target DNA strand, ... Authors: Chang, L, Wang, S. Deposit date: 2022-12-07 Release date: 2023-08-09 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Molecular mechanism for Tn7-like transposon recruitment by a type I-B CRISPR effector. Cell, 186, 2023
1CI6	TRANSCRIPTION FACTOR ATF4-C/EBP BETA BZIP HETERODIMER Descriptor: BETA-MERCAPTOETHANOL, FE (III) ION, TRANSCRIPTION FACTOR ATF-4, ... Authors: Podust, L.M, Kim, Y. Deposit date: 1999-04-07 Release date: 2000-12-04 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of the CCAAT box/enhancer-binding protein beta activating transcription factor-4 basic leucine zipper heterodimer in the absence of DNA J.Biol.Chem., 276, 2001
1KU9	X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus Descriptor: hypothetical protein MJ223 Authors: Ray, S.S, Bonanno, J.B, Chen, H, de Lencastre, H, Wu, S, Tomasz, A, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2002-01-21 Release date: 2002-12-25 Last modified: 2021-02-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus Proteins, 50, 2002
6M44	355 bp di-nucleosome harboring cohesive DNA termini (high cryoprotectant) Descriptor: CALCIUM ION, DNA (355-MER), Histone H2A type 1-B/E, ... Authors: Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. Deposit date: 2020-03-05 Release date: 2020-10-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.81 Å) Cite: Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
6M3V	355 bp di-nucleosome harboring cohesive DNA termini Descriptor: CALCIUM ION, DNA (355-MER), Histone H2A type 1-B/E, ... Authors: Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. Deposit date: 2020-03-04 Release date: 2020-10-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (4.6 Å) Cite: Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
3JA9	Structure of native human PCNA Descriptor: Proliferating cell nuclear antigen Authors: Lau, W.C.Y, Li, Y, Zhang, Q, Huen, M.S.Y. Deposit date: 2015-05-19 Release date: 2015-12-09 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (22 Å) Cite: Molecular architecture of the Ub-PCNA/Pol eta complex bound to DNA Sci Rep, 5, 2015
4XR0	Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- G/T mismatch. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*TP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), ... Authors: Oakley, A.J. Deposit date: 2015-01-20 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015
7MR1	Cryo-EM structure of RecBCD with undocked RecBNuc and flexible RecD C-terminus Descriptor: RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, RecBCD enzyme subunit RecD Authors: Hao, L, Zhang, R, Lohman, T.M. Deposit date: 2021-05-07 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Heterogeneity in E. coli RecBCD Helicase-DNA Binding and Base Pair Melting. J.Mol.Biol., 433, 2021
4XR1	Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- AG/AT mismatch. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*GP*TP*AP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*G)-3'), ... Authors: Oakley, A.J. Deposit date: 2015-01-20 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015
7MR0	Cryo-EM structure of RecBCD with docked RecBNuc and flexible RecD Descriptor: RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, RecBCD enzyme subunit RecD Authors: Hao, L, Zhang, R, Lohman, T.M. Deposit date: 2021-05-07 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Heterogeneity in E. coli RecBCD Helicase-DNA Binding and Base Pair Melting. J.Mol.Biol., 433, 2021
7MR2	Cryo-EM structure of RecBCD with undocked RecBNuc and flexible RecD Descriptor: RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, RecBCD enzyme subunit RecD Authors: Hao, L, Zhang, R, Lohman, T.M. Deposit date: 2021-05-07 Release date: 2021-07-28 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Heterogeneity in E. coli RecBCD Helicase-DNA Binding and Base Pair Melting. J.Mol.Biol., 433, 2021
4R94	Structure of the nickase domain of NS1 from MVM complexed with magnesium Descriptor: MAGNESIUM ION, Non-structural protein NS1 Authors: Liang, L, Zhao, H, Tang, L. Deposit date: 2014-09-03 Release date: 2015-01-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.668 Å) Cite: Structures of minute virus of mice replication initiator protein N-terminal domain: Insights into DNA nicking and origin binding. Virology, 476C, 2014
4EHS	Crystal structure of Helicobacter pylori DnaG Primase C terminal domain Descriptor: BETA-MERCAPTOETHANOL, DNA primase Authors: Abdul Rehman, S.A, Gourinath, S. Deposit date: 2012-04-04 Release date: 2013-05-01 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Crystal structure and mode of helicase binding of the C-terminal domain of primase from Helicobacter pylori J.Bacteriol., 195, 2013
4XR2	Escherichia Coli Replication Terminator Protein (Tus) H114A mutant Complexed With DNA- TerA lock. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*C)-3'), ... Authors: Oakley, A.J. Deposit date: 2015-01-20 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015
4XR3	Escherichia Coli Replication Terminator Protein (Tus) Complexed With DNA- GC(6) swapped. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*TP*AP*CP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*GP*T)-3'), ... Authors: Oakley, A.J. Deposit date: 2015-01-20 Release date: 2015-08-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Replisome speed determines the efficiency of the Tus-Ter replication termination barrier. Nature, 525, 2015

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