5M1P

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Calcium

Summary for 5M1P

Related5M1O 5M1N 5M1K 5M1F
DescriptorTerminase large subunit, CALCIUM ION (3 entities in total)
Functional Keywordslarge terminase, nuclease domain, hydrolase
Biological sourceThermus phage G20c
Total number of polymer chains2
Total molecular weight42429.76
Authors
Xu, R.G.,Jenkins, H.T.,Chechik, M.,Blagova, E.V.,Greive, S.J.,Antson, A.A. (deposition date: 2016-10-09, release date: 2016-10-26, Last modification date: 2017-05-03)
Primary citation
Xu, R.G.,Jenkins, H.T.,Chechik, M.,Blagova, E.V.,Lopatina, A.,Klimuk, E.,Minakhin, L.,Severinov, K.,Greive, S.J.,Antson, A.A.
Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45:3580-3590, 2017
PubMed: 28100693 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gkw1354
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.1 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.239001.3%3.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution