5M1N

Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Manganese

Summary for 5M1N

Related5M1K 5M1F
DescriptorPhage terminase large subunit, SULFATE ION, MANGANESE (II) ION, ... (5 entities in total)
Functional Keywordslarge terminase, nuclease domain, viral protein
Biological sourceThermus phage G20c
Total number of polymer chains2
Total molecular weight42860.85
Authors
Xu, R.G.,Jenkins, H.T.,Chechik, M.,Blagova, E.V.,Greive, S.J.,Antson, A.A. (deposition date: 2016-10-09, release date: 2016-10-26, Last modification date: 2017-05-03)
Primary citation
Xu, R.G.,Jenkins, H.T.,Chechik, M.,Blagova, E.V.,Lopatina, A.,Klimuk, E.,Minakhin, L.,Severinov, K.,Greive, S.J.,Antson, A.A.
Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45:3580-3590, 2017
PubMed: 28100693 (PDB entries with the same primary citation)
DOI: 10.1093/nar/gkw1354
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.2 Å)
?

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.187101.0%2.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 5m1n
no rotation
Molmil generated image of 5m1n
rotated about x axis by 90°
Molmil generated image of 5m1n
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 5m1n
no rotation
Molmil generated image of 5m1n
rotated about x axis by 90°
Molmil generated image of 5m1n
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (5m1n.pdb1.gz [36.86 KB])
Coordinate files for Biological unit (5m1n.pdb2.gz [38.44 KB])