PDB: 1466 resultsInfo pagesStatus searchChemie searchBIRD

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5NDG	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. Deposit date: 2017-03-08 Release date: 2017-12-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1Z	Crystal structure of the RPN13 PRU-RPN2 (932-953)-ubiquitin complex Descriptor: 26S proteasome non-ATPase regulatory subunit 1, Proteasomal ubiquitin receptor ADRM1, Ubiquitin Authors: Hemmis, C.W, VanderLinden, R.T, Yao, T, Robinson, H, Hill, C.P. Deposit date: 2017-03-02 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and energetics of pairwise interactions between proteasome subunits RPN2, RPN13, and ubiquitin clarify a substrate recruitment mechanism. J. Biol. Chem., 292, 2017
5V1Y	Crystal structure of the ternary RPN13 PRU-RPN2 (940-953)-ubiquitin complex Descriptor: 26S proteasome non-ATPase regulatory subunit 1, Proteasomal ubiquitin receptor ADRM1, Ubiquitin Authors: Hemmis, C.W, VanderLinden, R.T, Yao, T, Robinson, H, Hill, C.P. Deposit date: 2017-03-02 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.421 Å) Cite: Structure and energetics of pairwise interactions between proteasome subunits RPN2, RPN13, and ubiquitin clarify a substrate recruitment mechanism. J. Biol. Chem., 292, 2017
5N9V	NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila. Descriptor: NAD(P)(+)--arginine ADP-ribosyltransferase Authors: Chiarini, V, Tossavainen, H. Deposit date: 2017-02-27 Release date: 2018-03-21 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus. Biochim Biophys Acta Gen Subj, 1863, 2019
5N4W	Crystal structure of the Cul2-Rbx1-EloBC-VHL ubiquitin ligase complex Descriptor: Cullin-2, E3 ubiquitin-protein ligase RBX1, Elongin-B, ... Authors: Cardote, T.A.F, Gadd, M.S, Ciulli, A. Deposit date: 2017-02-11 Release date: 2017-06-07 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Crystal Structure of the Cul2-Rbx1-EloBC-VHL Ubiquitin Ligase Complex. Structure, 25, 2017
5N38	S65DParkin and pUB complex Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, ... Authors: Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H. Deposit date: 2017-02-08 Release date: 2017-04-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity. Nat. Struct. Mol. Biol., 24, 2017
5N2W	WT-Parkin and pUB complex Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, Polyubiquitin-B, ... Authors: Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H. Deposit date: 2017-02-08 Release date: 2017-04-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity. Nat. Struct. Mol. Biol., 24, 2017
5X3O	Crystal structure of p-DiUb-S65-COOH Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (2.194 Å) Cite: Structure of p-DiUb-S65-COOH at 2.19 Angstroms resolution. To Be Published
5X3N	Crystal structure of DiUb-K6 Descriptor: PHOSPHATE ION, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Method: X-RAY DIFFRACTION (1.649 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution. To Be Published
5X3M	crystal structure of p-Ub-S65-NH2 Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-05 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (1.818 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution To Be Published
5UMD	Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquine Descriptor: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... Authors: Wong, W, Bai, X.-C, Brown, A, Scheres, S, Baum, J. Deposit date: 2017-01-27 Release date: 2017-03-01 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis. Nat Microbiol, 2, 2017
5ULK	Crystal Structure of RNF165 in complex with a UbcH5b~Ub conjugate Descriptor: E3 ubiquitin-protein ligase RNF165, Ubiquitin, Ubiquitin-conjugating enzyme E2 D2, ... Authors: Middleton, A.J, Day, C.L, Wright, J.D. Deposit date: 2017-01-24 Release date: 2017-06-07 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Discovery of new non-covalent ubiquitin binding sites on UbcH5 To be published
5ULH	Structure of RNF165 in complex with a UbcH5b~Ub conjugate Descriptor: E3 ubiquitin-protein ligase RNF165, GLYCEROL, THIOCYANATE ION, ... Authors: Middleton, A.J, Day, C.L, Wright, J.D. Deposit date: 2017-01-24 Release date: 2017-06-07 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Discovery of new non-covalent ubiquitin binding sites on UbcH5 To be published
5ULF	Crystal Structure of a UbcH5b~Ub conjugate Descriptor: GLYCEROL, Ubiquitin, Ubiquitin-conjugating enzyme E2 D2 Authors: Middleton, A.J, Day, C.L, Wright, J.D. Deposit date: 2017-01-24 Release date: 2017-06-07 Last modified: 2017-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Discovery of new non-covalent ubiquitin binding sites on UbcH5 To be published
5UJL	Representative 1-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2017-10-25 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5UJN	Representative 2-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2018-08-08 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5WYJ	Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 40S ribosomal protein S1-A, ... Authors: Ye, K, Zhu, X, Sun, Q. Deposit date: 2017-01-13 Release date: 2017-03-29 Last modified: 2019-10-09 Method: ELECTRON MICROSCOPY (8.7 Å) Cite: Molecular architecture of the 90S small subunit pre-ribosome. Elife, 6, 2017
5WVO	Crystal structure of DNMT1 RFTS domain in complex with K18/K23 mono-ubiquitylated histone H3 Descriptor: DNA (cytosine-5)-methyltransferase 1, Histone H3.1, Ubiquitin, ... Authors: Ishiyama, S, Nishiyama, A, Nakanishi, M, Arita, K. Deposit date: 2016-12-28 Release date: 2017-11-15 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.997 Å) Cite: Structure of the Dnmt1 Reader Module Complexed with a Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals the Basis for DNA Methylation Maintenance Mol. Cell, 68, 2017
5UDH	HHARI/ARIH1-UBCH7~Ubiquitin Descriptor: E3 ubiquitin-protein ligase ARIH1, Ubiquitin C variant, Ubiquitin-conjugating enzyme E2 L3, ... Authors: Miller, D.J, Schulman, B.A. Deposit date: 2016-12-27 Release date: 2017-06-14 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Structural Studies of HHARI/UbcH7Ub Reveal Unique E2Ub Conformational Restriction by RBR RING1. Structure, 25, 2017
5MN9	Crystal structure of MINDY-1 tMIU in complex with K48-diUb Descriptor: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a Authors: Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y. Deposit date: 2016-12-13 Release date: 2017-01-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.05 Å) Cite: A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains. EMBO Rep., 18, 2017
5MNJ	Structure of MDM2-MDMX-UbcH5B-ubiquitin complex Descriptor: E3 ubiquitin-protein ligase Mdm2, Polyubiquitin-B, Protein Mdm4, ... Authors: Klejnot, M, Huang, D.T. Deposit date: 2016-12-13 Release date: 2017-05-31 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Structural analysis of MDM2 RING separates degradation from regulation of p53 transcription activity. Nat. Struct. Mol. Biol., 24, 2017
5U4P	Protein-protein complex between 26S proteasome regulatory subunit RPN8, RPN11, and Ubiquitin S31 Descriptor: 26S proteasome regulatory subunit RPN11, 26S proteasome regulatory subunit RPN8, Ubiquitin-40S ribosomal protein S31, ... Authors: Worden, E.J, Dong, K.C, Martin, A. Deposit date: 2016-12-05 Release date: 2017-09-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: An AAA Motor-Driven Mechanical Switch in Rpn11 Controls Deubiquitination at the 26S Proteasome. Mol. Cell, 67, 2017
5WQ4	Crystal structure of OPTN and linear diubiquitin complex Descriptor: Optineurin, ubiquitin Authors: Li, F, Pan, L. Deposit date: 2016-11-23 Release date: 2017-12-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural insights into the ubiquitin recognition by OPTN (optineurin) and its regulation by TBK1-mediated phosphorylation. Autophagy, 14, 2018
5H7S	Structural basis of the flanking zinc-finger motifs crucial for the E3 ligase activity of the LNX1 RING domain Descriptor: E3 ubiquitin-protein ligase LNX, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-like 1, ... Authors: Nayak, D, Sivaraman, J. Deposit date: 2016-11-21 Release date: 2017-11-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.49 Å) Cite: Structure of LNX1:Ubc13~Ubiquitin Complex Reveals the Role of Additional Motifs for the E3 Ligase Activity of LNX1. J. Mol. Biol., 430, 2018
5TXK	CRYSTAL STRUCTURE OF USP35 C450S IN COMPLEX WITH UBIQUITIN Descriptor: 1,2-ETHANEDIOL, Polyubiquitin-B, SULFATE ION, ... Authors: Bader, G, Weiss-Puxbaum, A, Zoephel, A. Deposit date: 2016-11-17 Release date: 2018-05-09 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Expansion of DUB functionality generated by alternative isoforms - USP35, a case study. J. Cell. Sci., 131, 2018

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