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PDB: 10 results

5H7R
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BU of 5h7r by Molmil
Structural basis of the flanking zinc-finger motifs crucial for the E3 ligase activity of the LNX1 RING domain
Descriptor: E3 ubiquitin-protein ligase LNX, ZINC ION
Authors:Nayak, D, Sivaraman, J.
Deposit date:2016-11-21
Release date:2017-11-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of LNX1:Ubc13~Ubiquitin Complex Reveals the Role of Additional Motifs for the E3 Ligase Activity of LNX1.
J. Mol. Biol., 430, 2018
5H7S
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BU of 5h7s by Molmil
Structural basis of the flanking zinc-finger motifs crucial for the E3 ligase activity of the LNX1 RING domain
Descriptor: E3 ubiquitin-protein ligase LNX, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-like 1, ...
Authors:Nayak, D, Sivaraman, J.
Deposit date:2016-11-21
Release date:2017-11-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Structure of LNX1:Ubc13~Ubiquitin Complex Reveals the Role of Additional Motifs for the E3 Ligase Activity of LNX1.
J. Mol. Biol., 430, 2018
8FY2
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BU of 8fy2 by Molmil
E3:PROTAC:target ternary complex structure (VCB/WH244/BCL-2)
Descriptor: Apoptosis regulator Bcl-2, Elongin-B, Elongin-C, ...
Authors:Nayak, D, Lv, D, Yuan, Y, Zhang, P, Hu, W, Ruben, E, Lv, Z, Sung, P, Hromas, R, Zheng, G, Zhou, D, Olsen, S.K.
Deposit date:2023-01-25
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Development and crystal structures of a potent second-generation dual degrader of BCL-2 and BCL-xL.
Nat Commun, 15, 2024
8FY1
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BU of 8fy1 by Molmil
E3:PROTAC:target ternary complex structure (VCB/753b/BCL-2)
Descriptor: Apoptosis regulator Bcl-2, Elongin-B, Elongin-C, ...
Authors:Nayak, D, Lv, D, Yuan, Y, Zhang, P, Hu, W, Lv, Z, Sung, P, Hromas, R, Zheng, G, Zhou, D, Olsen, S.K.
Deposit date:2023-01-25
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Development and crystal structures of a potent second-generation dual degrader of BCL-2 and BCL-xL.
Nat Commun, 15, 2024
5DIN
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BU of 5din by Molmil
Structural Basis for the Indispensable Role of a Unique Zinc Finger Motif in LNX2 Ubiquitination
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ligand of Numb protein X 2, ZINC ION
Authors:Sivaraman, J, Nayak, D.
Deposit date:2015-09-01
Release date:2015-10-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.864 Å)
Cite:Structural basis for the indispensable role of a unique zinc finger motif in LNX2 ubiquitination.
Oncotarget, 6, 2015
8FY0
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BU of 8fy0 by Molmil
E3:PROTAC:target ternary complex structure (VCB/753b/BCL-xL)
Descriptor: Bcl-2-like protein 1, CACODYLIC ACID, Elongin-B, ...
Authors:Olsen, S.K, Nayak, D, Lv, D, Yuan, Y, Zhang, P, Hu, W, Lv, Z, Sung, P, Hromas, R, Zheng, G, Zhou, D.
Deposit date:2023-01-25
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Development and crystal structures of a potent second-generation dual degrader of BCL-2 and BCL-xL.
Nat Commun, 15, 2024
8GF5
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BU of 8gf5 by Molmil
McrD binds asymmetrically to methyl-coenzyme M reductase improving active site accessibility during assembly
Descriptor: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
Authors:Joiner, A.M.N, Chadwick, G.L, Nayak, D.D.
Deposit date:2023-03-07
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (3 Å)
Cite:McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.
Proc.Natl.Acad.Sci.USA, 120, 2023
8GF6
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BU of 8gf6 by Molmil
Apo-apo MCR assembly intermediate
Descriptor: Methyl coenzyme M reductase, subunit D, Methyl-coenzyme M reductase subunit alpha, ...
Authors:Joiner, A.M.N, Chadwick, G.L, Nayak, D.D.
Deposit date:2023-03-07
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.
Proc.Natl.Acad.Sci.USA, 120, 2023
6JX6
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BU of 6jx6 by Molmil
Tetrameric form of Smac
Descriptor: Diablo homolog, mitochondrial
Authors:Sivaraman, J, Singh, S, Ng, J, Nayak, D.
Deposit date:2019-04-22
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Structural insights into a HECT-type E3 ligase AREL1 and its ubiquitination activitiesin vitro.
J.Biol.Chem., 294, 2019
6JX5
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BU of 6jx5 by Molmil
Hect domain of AREL1
Descriptor: Apoptosis-resistant E3 ubiquitin protein ligase 1
Authors:Sivaraman, J, Singh, S, Ng, J, Nayak, D.
Deposit date:2019-04-22
Release date:2019-12-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Structural insights into a HECT-type E3 ligase AREL1 and its ubiquitination activitiesin vitro.
J.Biol.Chem., 294, 2019

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