PDB: 82129 resultsInfo pagesStatus searchChemie searchBIRD

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8BQL	W-formate dehydrogenase from Desulfovibrio vulgaris - Co-crystallized with Formate and Reoxidized by exposure to air for 12 min Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, Formate dehydrogenase, ... Authors: Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J. Deposit date: 2022-11-21 Release date: 2023-01-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.906 Å) Cite: Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci, 24, 2022
8BQK	W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 22 min Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, ... Authors: Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J. Deposit date: 2022-11-21 Release date: 2023-01-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.587 Å) Cite: Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci, 24, 2022
8BQJ	W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 5 min Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, ... Authors: Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J. Deposit date: 2022-11-21 Release date: 2023-01-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.107 Å) Cite: Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci, 24, 2022
8BQI	W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 3 min Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, ... Authors: Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J. Deposit date: 2022-11-21 Release date: 2023-01-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.356 Å) Cite: Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci, 24, 2022
8BQH	W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 1.5 min Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CHLORIDE ION, ... Authors: Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J. Deposit date: 2022-11-21 Release date: 2023-01-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci, 24, 2022
8BQG	W-formate dehydrogenase from Desulfovibrio vulgaris - Soaking with Formate 1 min Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, ... Authors: Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J. Deposit date: 2022-11-21 Release date: 2023-01-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.946 Å) Cite: Tracking W-Formate Dehydrogenase Structural Changes During Catalysis and Enzyme Reoxidation. Int J Mol Sci, 24, 2022
8BQD	Yeast 80S ribosome in complex with Map1 (conformation 1) Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Knorr, A.G, Mackens-Kiani, T, Musial, J, Berninghausen, O, Becker, T, Beatrix, B, Beckmann, R. Deposit date: 2022-11-21 Release date: 2023-03-22 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: The dynamic architecture of Map1- and NatB-ribosome complexes coordinates the sequential modifications of nascent polypeptide chains. Plos Biol., 21, 2023
8BQ7	Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH2829 Descriptor: GLYCEROL, N-glycosylase/DNA lyase, NICKEL (II) ION, ... Authors: Scaletti, E, Stenmark, P. Deposit date: 2022-11-19 Release date: 2023-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH2829 To Be Published
8BQ6	Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation 2 composition) Descriptor: 2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE, AT3G07480.1, Acyl carrier protein 1, ... Authors: Klusch, N, Kuehlbrandt, W. Deposit date: 2022-11-18 Release date: 2023-05-10 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution. Nat.Plants, 9, 2023
8BQ5	Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation 1 composition) Descriptor: 2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE, AT3G07480.1, Acyl carrier protein 1, ... Authors: Klusch, N, Kuehlbrandt, W. Deposit date: 2022-11-18 Release date: 2023-03-22 Method: ELECTRON MICROSCOPY (2.73 Å) Cite: Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution. Nat.Plants, 9, 2023
8BQ4	Crystal Structure of Phosphatidylinositol 5-Phosphate 4-Kinase (PI5P4K2C) bound to an inhibitor Descriptor: 6-methyl-~{N}-(4-methylsulfonylphenyl)thieno[2,3-d]pyrimidin-4-amine, Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma Authors: Ogg, D.J, Howard, T.D. Deposit date: 2022-11-18 Release date: 2022-12-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.42 Å) Cite: The Identification of Potent, Selective, and Brain Penetrant PI5P4K gamma Inhibitors as In Vivo-Ready Tool Molecules. J.Med.Chem., 66, 2023
8BQ3	Crystal structure of human R13 mutant of the c-Src SH3 domain in complex with VSL12-peptide Descriptor: PRO-LEU-PRO, Proto-oncogene tyrosine-protein kinase Src Authors: Varejao, N, Navarro, S, Ventura, S, Reverter, D. Deposit date: 2022-11-18 Release date: 2023-11-29 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Crystal structure of human R13 mutant of the c-Src SH3 domain in complex with VSL12-peptide To Be Published
8BQ1	Herpes simplex virus type 1 protease Descriptor: Assemblin, GLYCEROL Authors: Pachota, M, Grzywa, R, Plewka, J, Wilk, P, Mackereth, C, Czarna, A, Sienczyk, M, Pyrc, K. Deposit date: 2022-11-18 Release date: 2023-11-29 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Herpes simplex virus type 1 protease To Be Published
8BPX	Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete composition) Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, ... Authors: Klusch, N, Kuehlbrandt, W. Deposit date: 2022-11-18 Release date: 2023-01-25 Last modified: 2023-02-01 Method: ELECTRON MICROSCOPY (2.09 Å) Cite: Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution. Nat.Plants, 9, 2023
8BPS	Aspartate transcarbamoylase mutant (N2045C, R2238C) from Chaetomium thermophilum CAD-like in apo form Descriptor: Carbamoyl-phosphate synthase (glutamine-hydrolyzing), GLYCEROL Authors: del Cano-Ochoa, F, Ramon-Maiques, S. Deposit date: 2022-11-25 Release date: 2023-02-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.03 Å) Cite: A Tailored Strategy to Crosslink the Aspartate Transcarbamoylase Domain of the Multienzymatic Protein CAD. Molecules, 28, 2023
8BPL	Aspartate transcarbamoylase mutant (N2045C, R2238C) from Chaetomium thermophilum CAD-like bound to carbamoyl phosphate Descriptor: Carbamoyl-phosphate synthase (glutamine-hydrolyzing), GLYCEROL, PHOSPHORIC ACID MONO(FORMAMIDE)ESTER, ... Authors: del Cano-Ochoa, F, Ramon-Maiques, S. Deposit date: 2022-11-16 Release date: 2023-02-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.58 Å) Cite: A Tailored Strategy to Crosslink the Aspartate Transcarbamoylase Domain of the Multienzymatic Protein CAD. Molecules, 28, 2023
8BPG	FcMR binding at subunit Fcu3 of IgM pentamer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fas apoptotic inhibitory molecule 3, ... Authors: Chen, Q, Rosenthal, P, Tolar, P. Deposit date: 2022-11-16 Release date: 2023-04-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for Fc receptor recognition of immunoglobulin M. Nat.Struct.Mol.Biol., 30, 2023
8BPF	FcMR binding at subunit Fcu1 of IgM pentamer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fas apoptotic inhibitory molecule 3, ... Authors: Chen, Q, Rosenthal, P, Tolar, P. Deposit date: 2022-11-16 Release date: 2023-04-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural basis for Fc receptor recognition of immunoglobulin M. Nat.Struct.Mol.Biol., 30, 2023
8BPE	8:1 binding of FcMR on IgM pentameric core Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fas apoptotic inhibitory molecule 3, ... Authors: Chen, Q, Rosenthal, P, Tolar, P. Deposit date: 2022-11-16 Release date: 2023-04-12 Last modified: 2023-07-26 Method: ELECTRON MICROSCOPY (3.63 Å) Cite: Structural basis for Fc receptor recognition of immunoglobulin M. Nat.Struct.Mol.Biol., 30, 2023
8BPD	Structural and Functional Characterization of the Novel Endo-alpha(1,4)-Fucoidanase Mef1 from the Marine Bacterium Muricauda eckloniae Descriptor: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, 1,2-ETHANEDIOL, CALCIUM ION, ... Authors: Mikkelsen, M.D, Meyer, A.S, Morth, J.P. Deposit date: 2022-11-16 Release date: 2023-11-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural and functional characterization of the novel endo-alpha (1,4)-fucoidanase Mef1 from the marine bacterium Muricauda eckloniae. Acta Crystallogr D Struct Biol, 79, 2023
8BP7	Citrate-bound hexamer of Synechococcus elongatus citrate synthase Descriptor: CITRIC ACID, Citrate synthase, MAGNESIUM ION, ... Authors: Mais, C.-N, Sendker, F, Bange, G. Deposit date: 2022-11-16 Release date: 2024-04-24 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.71 Å) Cite: Emergence of fractal geometries in the evolution of a metabolic enzyme. Nature, 628, 2024
8BP2	2.8A STRUCTURE OF ZOLIFLODACIN WITH S.AUREUS DNA GYRASE AND DNA Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (20-MER), DNA gyrase subunit A, ... Authors: Bax, B.D, Morgan, H, Warren, A.J. Deposit date: 2022-11-15 Release date: 2023-02-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.8 Å) Cite: A 2.8 angstrom Structure of Zoliflodacin in a DNA Cleavage Complex with Staphylococcus aureus DNA Gyrase. Int J Mol Sci, 24, 2023
8BOZ	structure of the Adherent-Invasive Escherichia coli Tle3/Tli3 T6SS effector/immunity complex Descriptor: CALCIUM ION, Lipoprotein, Transmembrane protein Authors: Cambillau, C, Roussel, A. Deposit date: 2022-11-15 Release date: 2023-02-08 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Activity and Crystal Structure of the Adherent-Invasive Escherichia coli Tle3/Tli3 T6SS Effector/Immunity Complex Determined Using an AlphaFold2 Predicted Model. Int J Mol Sci, 24, 2023
8BOX	LSD1-CoREST in complex with AW4 and SNAG peptide Descriptor: Lysine-specific histone demethylase 1A, REST corepressor 1, Zinc finger protein SNAI1, ... Authors: Caroli, J, Mattevi, A. Deposit date: 2022-11-15 Release date: 2024-06-05 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Distal drug resistance mutations promote covalent inhibitor-adduct Grob fragmentation in LSD1 to be published
8BOW	X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with an inhibitor 617 Descriptor: (2~{S})-2-[[(2~{S})-6-[[(2~{S})-3-naphthalen-2-yl-2-[[4-[[2-[(11~{Z})-4,7,10-tris(2-hydroxy-2-oxoethyl)-1,4,7,10-tetrazacyclododec-11-en-1-yl]ethanoylamino]methyl]cyclohexyl]carbonylamino]propanoyl]amino]-1-oxidanyl-1-oxidanylidene-hexan-2-yl]carbamoylamino]pentanedioic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Motlova, L, Barinka, C, Benesova, M. Deposit date: 2022-11-15 Release date: 2023-11-29 Method: X-RAY DIFFRACTION (1.58 Å) Cite: X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with an inhibitor 617 To Be Published

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