PDB: 13422 resultsInfo pagesStatus searchChemie searchBIRD

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7PLO	H. sapiens replisome-CUL2/LRR1 complex Descriptor: Cell division control protein 45 homolog, Claspin, Cullin-2, ... Authors: Jones, M.J, Yeeles, J.T.P, Deegan, T.D, Jenkyn-Bedford, M. Deposit date: 2021-09-01 Release date: 2021-11-10 Last modified: 2023-10-18 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: A conserved mechanism for regulating replisome disassembly in eukaryotes. Nature, 600, 2021
8E9A	Crystal structure of AsfvPolX in complex with 10-23 DNAzyme and Mg Descriptor: DNA/RNA (52-MER), MAGNESIUM ION, Repair DNA polymerase X, ... Authors: Cramer, E.R, Robart, A.R, Kaya, A.I. Deposit date: 2022-08-26 Release date: 2023-06-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Structure of a 10-23 deoxyribozyme exhibiting a homodimer conformation. Commun Chem, 6, 2023
5U0B	Structure of full-length Zika virus NS5 Descriptor: Genome polyprotein, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ... Authors: Zhao, B, Du, F. Deposit date: 2016-11-23 Release date: 2017-03-29 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure and function of the Zika virus full-length NS5 protein. Nat Commun, 8, 2017
8G88	Human Oct4 bound to nucleosome with human nMatn1 sequence Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. Deposit date: 2023-02-17 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G8B	Nucleosome with human nMatn1 sequence in complex with Human Oct4 Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. Deposit date: 2023-02-17 Release date: 2023-03-22 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
8G8G	Interaction of H3 tail in LIN28B nucleosome with Oct4 Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Sinha, K.K, Bilokapic, S, Du, Y, Malik, D, Halic, M. Deposit date: 2023-02-17 Release date: 2023-03-22 Last modified: 2023-12-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Histone modifications regulate pioneer transcription factor cooperativity. Nature, 619, 2023
7YI4	Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state Descriptor: Chromatin modification-related protein EAF3, Histone H2A, Histone H2B 1.1, ... Authors: Li, H.T, Yan, C.Y, Guan, H.P, Wang, P. Deposit date: 2022-07-14 Release date: 2023-06-14 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Diverse modes of H3K36me3-guided nucleosomal deacetylation by Rpd3S. Nature, 620, 2023
7YI5	Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in loose state Descriptor: Chromatin modification-related protein EAF3, Histone H2A, Histone H2B 1.1, ... Authors: Li, H.T, Yan, C.Y, Guan, H.P, Wang, P. Deposit date: 2022-07-14 Release date: 2023-06-14 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Diverse modes of H3K36me3-guided nucleosomal deacetylation by Rpd3S. Nature, 620, 2023
7V1J	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SAH and m7GpppA) Descriptor: Core protein, P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, S-ADENOSYL-L-HOMOCYSTEINE Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1B	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SAH) Descriptor: CITRIC ACID, Core protein, ISOPROPYL ALCOHOL, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1H	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SAM and m7GTP) Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, CITRIC ACID, Core protein, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1I	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (with an m7GMP-Arg28 adduct and in complex with SAH) Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, Core protein, GLYCEROL, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1D	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SAH and GpppA) Descriptor: Core protein, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1C	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SIN) Descriptor: Core protein, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1G	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (with a GMP-Arg28 adduct and in complex with SAM) Descriptor: CITRIC ACID, Core protein, GLYCEROL, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1E	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SAH and m7GpppAmG) Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE, Core protein, GLYCEROL, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
7V1F	Crystal structure of Omsk hemorrhagic fever virus NS5 MTase (in complex with SAM and GTP) Descriptor: Core protein, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Jia, H, Gong, P. Deposit date: 2021-08-04 Release date: 2022-06-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of Flavivirus NS5 Guanylyltransferase Reveal a GMP-Arginine Adduct. J.Virol., 96, 2022
6TCA	Phosphorylated p38 and MAPKAPK2 complex with inhibitor Descriptor: MAP kinase-activated protein kinase 2, Mitogen-activated protein kinase 14, N-[5-(dimethylsulfamoyl)-2-methylphenyl]-1-phenyl-5-propyl-1H-pyrazole-4-carboxamide Authors: Sok, P, Remenyi, A. Deposit date: 2019-11-05 Release date: 2020-07-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.7 Å) Cite: MAP Kinase-Mediated Activation of RSK1 and MK2 Substrate Kinases. Structure, 28, 2020
8YD8	Structure of FADD/Caspase-8/cFLIP death effector domain assembly Descriptor: CASP8 and FADD-like apoptosis regulator subunit p43, Caspase-8, FAS-associated death domain protein Authors: Lin, S.-C, Yang, C.-Y. Deposit date: 2024-02-19 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (3.11 Å) Cite: Deciphering DED assembly mechanisms in FADD-procaspase-8-cFLIP complexes regulating apoptosis. Nat Commun, 15, 2024
2DR5	Complex structure of CCA adding enzyme with mini-helix lacking CCA Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (32-MER) Authors: Tomita, K, Ishitani, R, Fukai, S, Nureki, O. Deposit date: 2006-06-08 Release date: 2006-10-31 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Complete crystallographic analysis of the dynamics of CCA sequence addition Nature, 443, 2006
2DVI	Complex structure of CCA-adding enzyme, mini-DCC and CTP Descriptor: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Tomita, K, Ishitani, R, Fukai, S, Nureki, O. Deposit date: 2006-07-31 Release date: 2006-11-14 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Complete crystallographic analysis of the dynamics of CCA sequence addition Nature, 443, 2006
8SXT	Structure of LINE-1 ORF2p with template:primer hybrid Descriptor: DNA primer, LINE-1 retrotransposable element ORF2 protein, MAGNESIUM ION, ... Authors: van Eeuwen, T, Taylor, M.S, Rout, M.P. Deposit date: 2023-05-24 Release date: 2024-01-10 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structures, functions and adaptations of the human LINE-1 ORF2 protein. Nature, 626, 2024
6Z2J	The structure of the dimeric HDAC1/MIDEAS/DNTTIP1 MiDAC deacetylase complex Descriptor: Deoxynucleotidyltransferase terminal-interacting protein 1, Histone deacetylase 1, INOSITOL HEXAKISPHOSPHATE, ... Authors: Fairall, L, Saleh, A, Ragan, T.J, Millard, C.J, Savva, C.G, Schwabe, J.W.R. Deposit date: 2020-05-16 Release date: 2020-07-08 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4 Å) Cite: The MiDAC histone deacetylase complex is essential for embryonic development and has a unique multivalent structure. Nat Commun, 11, 2020
6Z2K	The structure of the tetrameric HDAC1/MIDEAS/DNTTIP1 MiDAC deacetylase complex Descriptor: Deoxynucleotidyltransferase terminal-interacting protein 1, Histone deacetylase 1, INOSITOL HEXAKISPHOSPHATE, ... Authors: Fairall, L, Saleh, A, Ragan, T.J, Millard, C.J, Savva, C.G, Schwabe, J.W.R. Deposit date: 2020-05-16 Release date: 2020-07-08 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: The MiDAC histone deacetylase complex is essential for embryonic development and has a unique multivalent structure. Nat Commun, 11, 2020
8SXU	Structure of LINE-1 ORF2p with an oligo(A) template Descriptor: LINE-1 retrotransposable element ORF2 protein, RNA (25-MER) Authors: van Eeuwen, T, Taylor, M.S, Rout, M.P. Deposit date: 2023-05-24 Release date: 2024-01-10 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (3.66 Å) Cite: Structures, functions and adaptations of the human LINE-1 ORF2 protein. Nature, 626, 2024

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