PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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8VMT	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 160s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.48 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNJ	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 120s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VN0	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 80s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNE	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 10s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNM	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 320s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNU	Homing endonuclease H98A I-PpoI-DNA complex at pH6.0 (K+ MES) with 70 mM Tl+ for 1800s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-17 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
7OW0	1.55 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex with overhangs solved by Zn-SAD. Descriptor: DNA (5'-D(*TP*CP*TP*CP*CP*TP*AP*GP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), ZINC ION Authors: Dolot, R.M, Maciaszek, A, Nawrot, B.C. Deposit date: 2021-06-15 Release date: 2021-07-14 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.55 Å) Cite: First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes Crystals, 2022
8KGL	Structure of African swine fever virus topoisomerase II Descriptor: DNA topoisomerase 2 Authors: Cong, J, Xin, Y, Li, X, Chen, Y. Deposit date: 2023-08-19 Release date: 2024-04-03 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural insights into the DNA topoisomerase II of the African swine fever virus. Nat Commun, 15, 2024
8EAE	Structure of Ternary Complex of cGAS with dsDNA and Bound 5-pppG(2,5)pI Descriptor: Cyclic GMP-AMP synthase, MAGNESIUM ION, Palindromic DNA18, ... Authors: Wu, S, Sohn, J. Deposit date: 2022-08-29 Release date: 2023-10-25 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.56 Å) Cite: The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS. Nat Commun, 15, 2024
1VTC	MOLECULAR STRUCTURE OF THE OCTAMER D(G-G-C-C-G-G-C-C) MODIFIED A-DNA Descriptor: DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3') Authors: Wang, A.H.-J, Fujii, S, Van Boom, J.H, Rich, A. Deposit date: 1988-08-18 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Molecular Structure of the Octamer d(G-G-C-C-G-G-C-C) Modified A-DNA Proc.Natl.Acad.Sci.USA, 79, 1982
7OU4	The structure of MutS bound to one molecule of ATP and one molecule of ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein MutS, ... Authors: Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. Deposit date: 2021-06-11 Release date: 2022-01-12 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
7OU0	The structure of MutS bound to two molecules of ADP-Vanadate Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS, MAGNESIUM ION, ... Authors: Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. Deposit date: 2021-06-10 Release date: 2022-01-12 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
7OU2	The structure of MutS bound to two molecules of ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS Authors: Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. Deposit date: 2021-06-11 Release date: 2022-01-12 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
6R0C	Human-D02 Nucleosome Core Particle with biotin-streptavidin label Descriptor: DNA (142-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... Authors: Pye, V.E, Wilson, M.D, Cherepanov, P, Costa, A. Deposit date: 2019-03-12 Release date: 2019-09-25 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer. Nat Commun, 10, 2019
8DRH	HIGH RESOLUTION NMR STRUCTURE OF THE D(GCGTCAGG)R(CCUGACGC) HYBRID, MINIMIZED AVERAGE STRUCTURE Descriptor: DNA (5'-D(*GP*CP*GP*TP*CP*AP*GP*G)-3'), RNA (5'-R(*CP*CP*UP*GP*AP*CP*GP*C)-3') Authors: Bachelin, M, Hessler, G, Kurz, G, Hacia, J.G, Dervan, P.B, Kessler, H. Deposit date: 1997-10-13 Release date: 1998-05-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of a Stereoregular Phosphorothioate DNA/RNA Duplex Nat.Struct.Biol., 5, 1998
5FFJ	Structure of a nuclease-deletion mutant of the Type ISP restriction-modification enzyme LlaGI in complex with a DNA substrate mimic Descriptor: DNA (5'-D(P*TP*AP*GP*CP*TP*AP*AP*TP*AP*GP*AP*CP*TP*GP*GP*AP*TP*GP*GP*AP*GP*G)-3'), DNA (5'-D(P*TP*CP*CP*TP*CP*CP*AP*TP*CP*CP*AP*GP*TP*CP*TP*AP*TP*TP*AP*GP*CP*T)-3'), Endonuclease and methylase LlaGI Authors: Saikrishnan, K, Kulkarni, M, Nirwan, N. Deposit date: 2015-12-18 Release date: 2016-03-30 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Structural insights into DNA sequence recognition by Type ISP restriction-modification enzymes Nucleic Acids Res., 44, 2016
3IRQ	Crystal structure of a Z-Z junction Descriptor: DNA (5'-D(*AP*CP*CP*GP*CP*GP*CP*GP*AP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*TP*CP*GP*CP*GP*CP*G)-3'), Double-stranded RNA-specific adenosine deaminase Authors: Athanasiadis, A, de Rosa, M. Deposit date: 2009-08-24 Release date: 2010-05-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of a junction between two Z-DNA helices. Proc.Natl.Acad.Sci.USA, 107, 2010
2IE1	Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE Authors: Ohishi, H, Odoko, M, Tsukamoto, K, Hiyama, Y, Maezaki, N, Grzeskowiak, K, Ishida, T, Tanaka, T, Okabe, N, Fukuyama, K. Deposit date: 2006-09-16 Release date: 2007-10-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography To be Published
6EL8	Crystal structure of the Forkhead domain of human FOXN1 in complex with DNA Descriptor: DNA (5'-D(*GP*GP*TP*GP*GP*CP*GP*TP*CP*TP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*AP*GP*AP*CP*GP*CP*CP*AP*CP*C)-3'), Forkhead box protein N1 Authors: Newman, J.A, Aitkenhead, H.A, Pinkas, D.M, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O, Structural Genomics Consortium (SGC) Deposit date: 2017-09-28 Release date: 2017-11-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Crystal structure of the Forkhead domain of human FOXN1 in complex with DNA To be published
7K32	Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site Descriptor: DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ... Authors: Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. Deposit date: 2020-09-10 Release date: 2021-03-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.11 Å) Cite: Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
7K33	Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site Descriptor: DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ... Authors: Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. Deposit date: 2020-09-10 Release date: 2021-03-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.11 Å) Cite: Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
5UK7	Escherichia coli Hfq bound to dsDNA Descriptor: DNA (5'-D(P*CP*GP*GP*CP*AP*AP*AP*AP*AP*AP*CP*GP*GP*CP*AP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*GP*CP*CP*GP*TP*TP*TP*TP*TP*TP*GP*CP*CP*G)-3'), RNA-binding protein Hfq, ... Authors: Orans, J, Kovach, A.R, Brennan, R.G. Deposit date: 2017-01-20 Release date: 2018-05-09 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of Escherichia coli Hfq DNA complex reveals multifunctional nucleic acid binding site To Be Published
7OGG	Nse5/6 complex Descriptor: DNA repair protein KRE29,DNA repair protein KRE29,DNA repair protein KRE29, Non-structural maintenance of chromosome element 5,Non-structural maintenance of chromosome element 5,Non-structural maintenance of chromosome element 5 Authors: Basquin, J, Taschner, M, Gruber, S. Deposit date: 2021-05-06 Release date: 2021-07-07 Last modified: 2021-08-11 Method: X-RAY DIFFRACTION (3.29 Å) Cite: Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding. Embo J., 40, 2021
2FDC	Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complex Descriptor: 5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3', N-[6-(ACETYLAMINO)HEXYL]-3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-6-CARBOXAMIDE, UvrABC system protein B Authors: Truglio, J.J, Kisker, C. Deposit date: 2005-12-13 Release date: 2006-03-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural basis for DNA recognition and processing by UvrB. Nat.Struct.Mol.Biol., 13, 2006
6V1W	NMR Structure of C-terminal Domain of phi29 ATPase Descriptor: DNA packaging protein Authors: Mahler, B, Mao, H, Morais, M.C. Deposit date: 2019-11-21 Release date: 2020-09-30 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure of a vestigial nuclease provides insight into the evolution of functional transitions in viral dsDNA packaging motors. Nucleic Acids Res., 48, 2020

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