Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8ZWO
DownloadVisualize
BU of 8zwo by Molmil
Structure of CTF18-PCNA with ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Chromosome transmission fidelity protein 18 homolog, ...
Authors:Briola, G.R, Tehseen, M, Al-Amodi, A, Nguyen, P.Q, Savva, C.G, Hamdan, S.M, De Biasio, A.
Deposit date:2024-06-13
Release date:2025-06-18
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Structure of the human CTF18 clamp loader bound to PCNA
To Be Published
2I03
DownloadVisualize
BU of 2i03 by Molmil
Crystal structure of human dipeptidyl peptidase 4 (DPP IV) with potent alkynyl cyanopyrrolidine (ABT-279)
Descriptor: 2-[4-({2-[(2S,5R)-2-(AMINOMETHYL)-5-ETHYNYLPYRROLIDIN-1-YL]-2-OXOETHYL}AMINO)-4-METHYLPIPERIDIN-1-YL]ISONICOTINIC ACID, Dipeptidyl peptidase 4
Authors:Longenecker, K.L, Madar, D.J.
Deposit date:2006-08-09
Release date:2006-12-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery of 2-[4-{{2-(2S,5R)-2-cyano-5-ethynyl-1-pyrrolidinyl]-2-oxoethyl]amino]- 4-methyl-1-piperidinyl]-4-pyridinecarboxylic acid (ABT-279): a very potent, selective, effective, and well-tolerated inhibitor of dipeptidyl peptidase-IV, useful for the treatment of diabetes.
J.Med.Chem., 49, 2006
8ZSE
DownloadVisualize
BU of 8zse by Molmil
Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-2002
Descriptor: 2-methyl-5-(4-methylpiperazin-1-yl)-~{N}-(1-quinolin-4-ylcyclopropyl)benzamide, Papain-like protease nsp3, ZINC ION
Authors:Lu, Y, Shang, J.
Deposit date:2024-06-05
Release date:2025-06-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-2002
To Be Published
2VGD
DownloadVisualize
BU of 2vgd by Molmil
Crystal structure of environmental isolated GH11 in complex with xylobiose and feruloyl-arabino-xylotriose
Descriptor: 5-O-[(2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]-alpha-L-ribofuranose, ENXYN11A, GLYCEROL, ...
Authors:Vardakou, M, Dumon, C, Flint, J.E, Murray, J.W, Christakopoulos, P, Weiner, D.P, Juge, N, Lewis, R.J, Gilbert, H.J.
Deposit date:2007-11-12
Release date:2007-12-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Understanding the Structural Basis for Substrate and Inhibitor Recognition in Eukaryotic Gh11 Xylanases.
J.Mol.Biol., 375, 2008
5JQY
DownloadVisualize
BU of 5jqy by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese, N-oxalylglycine and factor X substrate peptide fragment(39mer-4Ser)
Descriptor: ACETATE ION, Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, ...
Authors:McDonough, M.A, Pfeffer, I.
Deposit date:2016-05-05
Release date:2017-05-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern.
Nat Commun, 10, 2019
8ZVL
DownloadVisualize
BU of 8zvl by Molmil
human citrate synthases complexed with oxaloacetate
Descriptor: Citrate synthase, mitochondrial, OXALOACETATE ION
Authors:Yang, L.Y, Fang, Y.J.
Deposit date:2024-06-11
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:human citrate synthases complexed with oxaloacetate
To Be Published
5JRA
DownloadVisualize
BU of 5jra by Molmil
Nitric oxide complex of the L16V mutant of cytochrome c prime from Alcaligenes xylosoxidans
Descriptor: ASCORBIC ACID, Cytochrome c', HEME C, ...
Authors:Kekilli, D, Strange, R.W, Hough, M.A.
Deposit date:2016-05-06
Release date:2017-03-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Engineering proximal vs. distal heme-NO coordination via dinitrosyl dynamics: implications for NO sensor design.
Chem Sci, 8, 2017
8ZXV
DownloadVisualize
BU of 8zxv by Molmil
sweet protein MNEI-Mut 6-4
Descriptor: Monellin chain B,Monellin chain A
Authors:You, T.J, Liu, S.
Deposit date:2024-06-15
Release date:2025-06-18
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structural Basis for the Exceptional Thermal Stability of the Boiling-Resistant Sweet Protein MNEI.
J.Agric.Food Chem., 73, 2025
8ZXT
DownloadVisualize
BU of 8zxt by Molmil
sweet protein MNEI-Mut 6-3
Descriptor: Monellin chain B,Monellin chain A
Authors:You, T.J, Liu, S.
Deposit date:2024-06-15
Release date:2025-06-18
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Exceptional Thermal Stability of the Boiling-Resistant Sweet Protein MNEI.
J.Agric.Food Chem., 73, 2025
5JSG
DownloadVisualize
BU of 5jsg by Molmil
Crystal structure of Spindlin1 bound to compound EML405
Descriptor: CHLORIDE ION, MAGNESIUM ION, Spindlin-1, ...
Authors:Su, X, Li, H.
Deposit date:2016-05-08
Release date:2017-05-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Developing Spindlin1 small-molecule inhibitors by using protein microarrays
Nat. Chem. Biol., 13, 2017
8ZXS
DownloadVisualize
BU of 8zxs by Molmil
Crystal structure of multidrug efflux transporter OqxB from Klebsiella pneumoniae
Descriptor: DODECYL-BETA-D-MALTOSIDE, Efflux pump membrane transporter, GLYCEROL
Authors:Murakami, S, Yamashita, E, Okada, U.
Deposit date:2024-06-15
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of multidrug efflux transporter OqxB from Klebsiella pneumoniae
To Be Published
1KW9
DownloadVisualize
BU of 1kw9 by Molmil
Crystal structure of 2,3-dihydroxybiphenyl dioxygenase (BphC) in complex with 2,3-dihydroxybiphenyl at 2.0A resolution
Descriptor: 2,3-Dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL, FE (II) ION
Authors:Sato, N, Uragami, Y, Nishizaki, T, Takahashi, Y, Sazaki, G, Sugimoto, K, Nonaka, T, Masai, E, Fukuda, M, Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
8ZFI
DownloadVisualize
BU of 8zfi by Molmil
Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S13, ...
Authors:Sriramoju, M.K, Ko, T.P, Draczkowski, P, Hsu, S.T.D.
Deposit date:2024-05-07
Release date:2025-06-18
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
To Be Published
8ZVE
DownloadVisualize
BU of 8zve by Molmil
Solution structure of free TMPRSS2 promoter G-quadruplex
Descriptor: DNA (5'-D(*TP*CP*TP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*C)-3')
Authors:Wang, K.B.
Deposit date:2024-06-11
Release date:2025-06-18
Method:SOLUTION NMR
Cite:NMR Solution Structure of the Major TMPRSS2 Promoter G-Quadruplex and Its Complex with Berberine
To Be Published
7RNN
DownloadVisualize
BU of 7rnn by Molmil
Human ASIC1a-Nb.C1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid-sensing ion channel 1, Nanobodies Nb.C1
Authors:Wu, Y, Chen, Z, Sigworth, F.J, Canessa, C.M.
Deposit date:2021-07-29
Release date:2021-08-11
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structure and analysis of nanobody binding to the human ASIC1a ion channel.
Elife, 10, 2021
8ZVP
DownloadVisualize
BU of 8zvp by Molmil
Human SIRT6 in complex with EGCG
Descriptor: (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate, NAD-dependent protein deacylase sirtuin-6, ZINC ION, ...
Authors:Song, B, Wang, Y.
Deposit date:2024-06-11
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:SIRT6 in complex with EGCG
To Be Published
2HY7
DownloadVisualize
BU of 2hy7 by Molmil
Crystal Structure of GumK, a beta-glucuronosyltransferase from Xanthomonas campestris
Descriptor: Glucuronosyltransferase GumK
Authors:Barreras, M.
Deposit date:2006-08-04
Release date:2008-04-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of GumK, a membrane-associated glucuronosyltransferase.
J.Biol.Chem., 283, 2008
8ZR7
DownloadVisualize
BU of 8zr7 by Molmil
Crystal structure of Skd3
Descriptor: Caseinolytic peptidase B protein homolog, PHOSPHATE ION
Authors:Lee, S, Lee, C.
Deposit date:2024-06-04
Release date:2025-06-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of Skd3
To Be Published
5JPH
DownloadVisualize
BU of 5jph by Molmil
Structure of a GNAT acetyltransferase SACOL1063 from Staphylococcus aureus in complex with CoA
Descriptor: Acetyltransferase SACOL1063, CHLORIDE ION, COENZYME A
Authors:Majorek, K.A, Osinski, T, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-05-03
Release date:2016-06-29
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Insight into the 3D structure and substrate specificity of previously uncharacterized GNAT superfamily acetyltransferases from pathogenic bacteria.
Biochim.Biophys.Acta, 1865, 2016
5JPZ
DownloadVisualize
BU of 5jpz by Molmil
Crystal structure of HAT domain of human Squamous Cell Carcinoma Antigen Recognized By T Cells 3, SART3 (TIP110)
Descriptor: Squamous cell carcinoma antigen recognized by T-cells 3
Authors:Grazette, A, Harper, S, Emsley, J, Layfield, R, Dreveny, I.
Deposit date:2016-05-04
Release date:2016-05-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.045 Å)
Cite:unpublished
To Be Published
8ZTB
DownloadVisualize
BU of 8ztb by Molmil
Crystal Structure of Active Site Influencing Variant (F218Y) of Imp-1 Metallo-beta-lactamase.
Descriptor: ACETATE ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Baidya, S, Dhankhar, K, Hazra, S.
Deposit date:2024-06-06
Release date:2025-06-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure of Active Site Influencing Variant (F218Y) of Imp-1 Metallo-beta-lactamase.
To Be Published
2HYQ
DownloadVisualize
BU of 2hyq by Molmil
Crystal structure of a complex of griffithsin with 6alpha-mannobiose
Descriptor: Griffithsin, SULFATE ION, alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose
Authors:Ziolkowska, N.E, Wlodawer, A.
Deposit date:2006-08-07
Release date:2007-04-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin.
Proteins, 67, 2007
5JQE
DownloadVisualize
BU of 5jqe by Molmil
Crystal structure of caspase8 tDED
Descriptor: Sugar ABC transporter substrate-binding protein,Caspase-8 chimera
Authors:Fu, T, Li, Y, Lu, A, Wu, H.
Deposit date:2016-05-04
Release date:2016-10-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.157 Å)
Cite:Cryo-EM Structure of Caspase-8 Tandem DED Filament Reveals Assembly and Regulation Mechanisms of the Death-Inducing Signaling Complex.
Mol. Cell, 64, 2016
8ZW3
DownloadVisualize
BU of 8zw3 by Molmil
Solution structure of TMPRSS2 promoter G-quadruplex
Descriptor: BERBERINE, DNA (5'-D(*TP*CP*TP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*C)-3')
Authors:Wang, K.B.
Deposit date:2024-06-12
Release date:2025-06-18
Method:SOLUTION NMR
Cite:NMR Solution Structure of the Major TMPRSS2 Promoter G-Quadruplex and Its Complex with Berberine
To Be Published
8ZVV
DownloadVisualize
BU of 8zvv by Molmil
human citrate synthase complexed with citrate
Descriptor: CITRIC ACID, Citrate synthase, mitochondrial
Authors:Yang, L.Y, Fang, Y.J.
Deposit date:2024-06-12
Release date:2025-06-18
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:human citrate synthase complexed with citrate
To Be Published

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon