PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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6YDP	55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST) Descriptor: 12S rRNA, 28S ribosomal protein S16, mitochondrial, ... Authors: Kummer, E, Ban, N. Deposit date: 2020-03-20 Release date: 2020-07-15 Last modified: 2020-08-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1. Embo J., 39, 2020
4R0E	Crystal Structure of the Poliovirus RNA-Dependent RNA Polymerase Low-Fidelity Mutant 3Dpol H273R Descriptor: RNA-directed RNA polymerase Authors: Marcotte, L.L, Gohara, D.W, Filman, D.J, Hogle, J.M. Deposit date: 2014-07-30 Release date: 2014-11-12 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Dynamics as a Contributor to Error-prone Replication by an RNA-dependent RNA Polymerase. J.Biol.Chem., 289, 2014
6N67	Crystal structure of the ligase domain of fungal tRNA ligase Trl1 Descriptor: CHLORIDE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, GLYCEROL, ... Authors: Peschek, J, Walter, P. Deposit date: 2018-11-26 Release date: 2019-07-03 Last modified: 2019-07-10 Method: X-RAY DIFFRACTION (1.9 Å) Cite: tRNA ligase structure reveals kinetic competition between non-conventional mRNA splicing and mRNA decay. Elife, 8, 2019
8R8M	70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... Authors: Koller, T.O, Wilson, D.N. Deposit date: 2023-11-29 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv, 2024
2C4R	Catalytic domain of E. coli RNase E Descriptor: MAGNESIUM ION, RIBONUCLEASE E, SSRNA MOLECULE: 5'-R(*AP*CP*AP*GP*UP*AP*UP*UP*UP*GP)-3', ... Authors: Marcaida, M.J, Callaghan, A.J, Luisi, B.F. Deposit date: 2005-10-21 Release date: 2005-10-25 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structure of E. Coli Rnase E Catalytic Domain and Implications for RNA Processing and Turnover Nature, 437, 2005
2EB1	Crystal Structure of the C-Terminal RNase III Domain of Human Dicer Descriptor: Endoribonuclease Dicer, MAGNESIUM ION Authors: Takeshita, D, Zenno, S, Lee, W.C, Nagata, K, Saigo, K, Tanokura, M. Deposit date: 2007-02-05 Release date: 2007-11-06 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Homodimeric Structure and Double-stranded RNA Cleavage Activity of the C-terminal RNase III Domain of Human Dicer J.Mol.Biol., 374, 2007
8OU1	Crystal structure of the SPOC domain of mouse SPOCD1 Descriptor: CITRATE ANION, SPOC domain-containing protein 1 Authors: Heep, M, Cook, A.G, O'Carroll, D. Deposit date: 2023-04-21 Release date: 2024-02-21 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: C19ORF84 connects piRNA and DNA methylation machineries to defend the mammalian germ line. Mol.Cell, 84, 2024
6ZU5	Structure of the Paranosema locustae ribosome in complex with Lso2 Descriptor: 18S rRNA, 25S rRNA, 5S rRNA, ... Authors: Ehrenbolger, K, Jespersen, N, Sharma, H, Sokolova, Y.Y, Tokarev, Y.S, Vossbrinck, C.R, Barandun, J. Deposit date: 2020-07-21 Release date: 2020-11-04 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome. Plos Biol., 18, 2020
3KRN	Crystal Structure of C. elegans cell-death-related nuclease 5(CRN-5) Descriptor: Protein C14A4.5, confirmed by transcript evidence Authors: Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Chow, S.Y, Yuan, H.S. Deposit date: 2009-11-19 Release date: 2010-01-26 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.918 Å) Cite: Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation Rna, 16, 2010
4DDZ	Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis Descriptor: GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE (GpgS), GLYCEROL Authors: Albesa-Jove, D, Urresti, S, Gest, P.M, van der Woerd, M, Jackson, M, Guerin, M.E. Deposit date: 2012-01-19 Release date: 2012-06-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Mechanistic insights into the retaining glucosyl-3-phosphoglycerate synthase from mycobacteria. J.Biol.Chem., 287, 2012
4DE7	Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mg2+ and uridine-diphosphate (UDP) Descriptor: GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE (GpgS), GLYCEROL, URIDINE-5'-DIPHOSPHATE Authors: Albesa-Jove, D, Urresti, S, van der Woerd, M, Guerin, M.E. Deposit date: 2012-01-20 Release date: 2012-06-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: Mechanistic insights into the retaining glucosyl-3-phosphoglycerate synthase from mycobacteria. J.Biol.Chem., 287, 2012
2BX2	Catalytic domain of E. coli RNase E Descriptor: MAGNESIUM ION, RIBONUCLEASE E, RNA (5'-R(*UP*UP*UP*AP*CP*AP*GP*UP*AP*UP*UP* UP*GP*UP*U)-3'), ... Authors: Marcaida, M.J, Callaghan, A.J, Scott, W.G, Luisi, B.F. Deposit date: 2005-07-21 Release date: 2005-10-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structure of E. Coli Rnase E Catalytic Domain and Implications for RNA Processing and Turnover Nature, 437, 2005
3K1F	Crystal structure of RNA Polymerase II in complex with TFIIB Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Kostrewa, D, Zeller, M.E, Armache, K.-J, Seizl, M, Leike, K, Thomm, M, Cramer, P. Deposit date: 2009-09-27 Release date: 2009-11-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (4.3 Å) Cite: RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature, 462, 2009
7ABI	Human pre-Bact-2 spliceosome Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Beta-catenin-like protein 1, ... Authors: Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R. Deposit date: 2020-09-07 Release date: 2021-02-10 Method: ELECTRON MICROSCOPY (8 Å) Cite: Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation. Science, 370, 2020
8EJ3	M. tuberculosis RNAP pause escaped complex with Bacillus subtilis NusG and GMPCPP Descriptor: DNA (29-MER), DNA (32-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Vishwakarma, R.K, Murakami, K.S. Deposit date: 2022-09-16 Release date: 2023-02-01 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proc.Natl.Acad.Sci.USA, 120, 2023
2EZ6	Crystal structure of Aquifex aeolicus RNase III (D44N) complexed with product of double-stranded RNA processing Descriptor: 28-MER, MAGNESIUM ION, Ribonuclease III Authors: Gan, J, Tropea, J.E, Austin, B.P, Court, D.L, Waugh, D.S, Ji, X. Deposit date: 2005-11-10 Release date: 2006-02-07 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural Insight into the Mechanism of Double-Stranded RNA Processing by Ribonuclease III. Cell(Cambridge,Mass.), 124, 2006
4RZ9	Pre-mRNA-splicing factor 38A AS 1-179 Descriptor: Pre-mRNA-splicing factor 38A Authors: Schuetze, T, Weber, G, Wahl, M.C. Deposit date: 2014-12-19 Release date: 2015-12-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.28 Å) Cite: The N-terminal domain of the unusual SR protein hPrp38 is an interaction hub in the spliceosome To be Published
4RZA	Pre-mRNA-splicing factor 38A AS 1-205 Descriptor: Pre-mRNA-splicing factor 38A Authors: Schuetze, T, Ulrich, A, Wahl, M.C. Deposit date: 2014-12-19 Release date: 2015-12-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The N-terminal domain of the unusual SR protein hPrp38 is an interaction hub in the spliceosome To be Published
1K8W	Crystal structure of the E. coli pseudouridine synthase TruB bound to a T stem-loop RNA Descriptor: 5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FHU)P*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3', SULFATE ION, tRNA Pseudouridine Synthase B Authors: Hoang, C, Ferre-D'Amare, A.R. Deposit date: 2001-10-25 Release date: 2001-12-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell(Cambridge,Mass.), 107, 2001
5X51	RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... Authors: Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. Deposit date: 2017-02-14 Release date: 2017-05-17 Method: X-RAY DIFFRACTION (6.996 Å) Cite: Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
5X50	RNA Polymerase II from Komagataella Pastoris (Type-2 crystal) Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... Authors: Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. Deposit date: 2017-02-14 Release date: 2017-05-17 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (4.293 Å) Cite: Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
7OJK	Lassa virus L protein bound to the distal promoter duplex [DISTAL-PROMOTER] Descriptor: 3' RNA, 5' RNA, RNA-directed RNA polymerase L, ... Authors: Kouba, T, Vogel, D, Thorkelsson, S, Quemin, E, Williams, H.M, Milewski, M, Busch, C, Gunther, S, Grunewald, K, Rosenthal, M, Cusack, S. Deposit date: 2021-05-16 Release date: 2021-12-01 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.89 Å) Cite: Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity. Nat Commun, 12, 2021
8DGJ	Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex Ib Descriptor: Endoribonuclease Dcr-1, Loquacious, isoform B Authors: Jouravleva, K, Golovenko, D, Demo, G, Dutcher, R.C, Tanaka Hall, T.M, Zamore, P.D, Korostelev, A.A. Deposit date: 2022-06-23 Release date: 2022-11-16 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.02 Å) Cite: Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB. Mol.Cell, 82, 2022
8DGI	Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex Ia Descriptor: Endoribonuclease Dcr-1, Loquacious, isoform B Authors: Jouravleva, K, Golovenko, D, Demo, G, Dutcher, R.C, Tanaka Hall, T.M, Zamore, P.D, Korostelev, A.A. Deposit date: 2022-06-23 Release date: 2022-11-16 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.94 Å) Cite: Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB. Mol.Cell, 82, 2022
4TVX	Crystal structure of the E. coli CRISPR RNA-guided surveillance complex, Cascade Descriptor: CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ... Authors: Jackson, R.N, Golden, S.M, Carter, J, Wiedenheft, B. Deposit date: 2014-06-28 Release date: 2014-08-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Structural biology. Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli. Science, 345, 2014

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