PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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5IBB	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. Deposit date: 2016-02-22 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.96 Å) Cite: The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
5IB8	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. Deposit date: 2016-02-22 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.13 Å) Cite: The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
7NSI	55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E) Descriptor: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... Authors: Kummer, E, Schubert, K, Ban, N. Deposit date: 2021-03-07 Release date: 2021-06-02 Last modified: 2021-12-15 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Structural basis of translation termination, rescue, and recycling in mammalian mitochondria. Mol.Cell, 81, 2021
5IB7	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. Deposit date: 2016-02-22 Release date: 2016-05-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.99 Å) Cite: The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
8G6X	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe Descriptor: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminobenzamide, ... Authors: Majumdar, C, Cate, J.H.D. Deposit date: 2023-02-16 Release date: 2023-03-22 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.31 Å) Cite: Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8G6Y	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe Descriptor: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminopyridine-4-carboxamide, ... Authors: Majumdar, C, Cate, J.H.D. Deposit date: 2023-02-16 Release date: 2023-04-05 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.09 Å) Cite: Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
6Q8U	Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein Descriptor: 50S ribosomal protein L7Ae, RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3'), SODIUM ION Authors: Huang, L, Lilley, D.M.J. Deposit date: 2018-12-16 Release date: 2019-07-03 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Effect of methylation of adenine N6on kink turn structure depends on location. Rna Biol., 16, 2019
7OHS	Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (4.38 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHW	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
6XYW	Structure of the plant mitochondrial ribosome Descriptor: 28S ribosomal S34 protein, 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial, ... Authors: Soufari, H, Waltz, F, Bochler, A, Giege, P, Hashem, Y. Deposit date: 2020-01-31 Release date: 2020-04-15 Last modified: 2020-04-29 Method: ELECTRON MICROSCOPY (3.86 Å) Cite: Cryo-EM structure of the RNA-rich plant mitochondrial ribosome. Nat.Plants, 6, 2020
7OHQ	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHX	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
8UI0	Structure of poised transcription complex Pol II-DSIF-NELF - pre-translocated Descriptor: DNA, DNA (38-MER), DNA-directed RNA polymerase II subunit E, ... Authors: Vos, S.M, Su, B.G. Deposit date: 2023-10-09 Release date: 2024-03-20 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 2024
8UHG	Structure of paused transcription complex Pol II-DSIF-NELF - poised post-translocated Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Vos, S.M, Su, B.G. Deposit date: 2023-10-09 Release date: 2024-03-20 Last modified: 2024-04-17 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 84, 2024
8UHA	Structure of paused transcription complex Pol II-DSIF-NELF - tilted Descriptor: DNA (28-MER), DNA (38-MER), DNA-directed RNA polymerase II subunit E, ... Authors: Vos, S.M, Su, B.G. Deposit date: 2023-10-08 Release date: 2024-03-20 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 2024
5MSG	Influenza B polymerase bound to vRNA promoter and capped RNA primer Descriptor: PHOSPHATE ION, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Cusack, S, Guilligay, D. Deposit date: 2017-01-04 Release date: 2017-02-08 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.8 Å) Cite: An in vitro fluorescence based study of initiation of RNA synthesis by influenza B polymerase. Nucleic Acids Res., 45, 2017
8QSJ	Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7 Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Ritter, C, Nguyen, T.G, Kummer, E. Deposit date: 2023-10-10 Release date: 2023-12-13 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome. Nat Commun, 14, 2023
4U6K	Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*(NCU)P*(NTT)P*CP*TP*TP*CP*TP*(NTT)P*(NCU))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') Authors: Kondo, J, Nomura, Y, Kitahara, Y, Obika, S, Torigoe, H. Deposit date: 2014-07-29 Release date: 2015-08-19 Last modified: 2024-06-26 Method: X-RAY DIFFRACTION (1.5 Å) Cite: The crystal structure of a 2',4'-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA. Chem.Commun.(Camb.), 52, 2016
4U6M	Crystal structure of DNA/RNA duplex obtained in the presence of Spermine Descriptor: DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') Authors: Kondo, J, Nomura, Y, Kitahara, Y, Obika, S, Torigoe, H. Deposit date: 2014-07-29 Release date: 2015-08-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The crystal structure of a 2',4'-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA. Chem.Commun.(Camb.), 52, 2016
4U6L	Crystal structure of DNA/RNA duplex obtained in the presence of [Co(NH3)6]Cl3 and SrCl2 Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3'), ... Authors: Kondo, J, Nomura, Y, Kitahara, Y, Obika, S, Torigoe, H. Deposit date: 2014-07-29 Release date: 2015-08-19 Last modified: 2024-06-26 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The crystal structure of a 2',4'-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA. Chem.Commun.(Camb.), 52, 2016
7WTL	Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D Descriptor: 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ... Authors: Cheng, J, La Venuta, G, Lau, B, Berninghausen, O, Beckmann, R, Hurt, E. Deposit date: 2022-02-05 Release date: 2022-10-19 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: In vitro structural maturation of an early stage pre-40S particle coupled with U3 snoRNA release and central pseudoknot formation. Nucleic Acids Res., 50, 2022
7OHP	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-11 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
5IT9	Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES. Descriptor: 18S ribosomal RNA, Cricket paralysis virus IRES RNA, MAGNESIUM ION, ... Authors: Murray, J, Savva, C.G, Shin, B.S, Dever, T.E, Ramakrishnan, V, Fernandez, I.S. Deposit date: 2016-03-16 Release date: 2016-05-18 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural characterization of ribosome recruitment and translocation by type IV IRES. Elife, 5, 2016
7OH3	Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae Descriptor: 25S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Milkereit, P, Poell, G. Deposit date: 2021-05-08 Release date: 2021-11-03 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
8UIS	Structure of transcription complex Pol II-DSIF-NELF-TFIIS Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ... Authors: Su, B.G, Vos, S.M. Deposit date: 2023-10-10 Release date: 2024-03-20 Last modified: 2024-04-17 Method: ELECTRON MICROSCOPY (3.23 Å) Cite: Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 84, 2024

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