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9B39	Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.84 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 2024
9B38	Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.36 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 2024
9B37	Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map. Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (6.66 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 2024
9B36	Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map. Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (4.29 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 2024
9B35	Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344 Descriptor: GLUTAMIC ACID, Glutamate receptor ionotropic, kainate 2 Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 2024
9B34	Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA Descriptor: CALCIUM ION, Concanavalin A, ZINC ION Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 2024
9B33	Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA Descriptor: CALCIUM ION, Concanavalin V, ZINC ION Authors: Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I. Deposit date: 2024-03-18 Release date: 2024-05-22 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (4.07 Å) Cite: Kainate receptor channel opening and gating mechanism. Nature, 2024
9B27	Dia1 at the Barbed End of F-Actin Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Palmer, N.J, Barrie, K.R, Dominguez, R. Deposit date: 2024-03-14 Release date: 2024-05-29 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.51 Å) Cite: Mechanisms of actin filament severing and elongation by formins Nature, 2024
9B22	Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose and AMP bound) Descriptor: ADENOSINE MONOPHOSPHATE, ADP-ribose pyrophosphatase, MAGNESIUM ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-03-14 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose and AMP bound) To be published
9B21	Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose bound, Orthorhombic P form) Descriptor: ADP-ribose pyrophosphatase, MAGNESIUM ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-03-14 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose bound, Orthorhombic P form) To be published
9B20	Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (AMP bound) Descriptor: ADENOSINE MONOPHOSPHATE, ADP-ribose pyrophosphatase, MAGNESIUM ION Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-03-14 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (AMP bound) To be published
9B1Z	Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo) Descriptor: ADP-ribose pyrophosphatase, SODIUM ION Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-03-14 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo) To be published
9B1R	Functional implication of the homotrimeric multidomain vacuolar sorting receptor 1 from Arabidopsis thaliana Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Vacuolar-sorting receptor 1 Authors: Park, H, Youn, B, Park, D.J, Puthanveettil, S.V, Kang, C. Deposit date: 2024-03-13 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Functional implication of the homotrimeric multidomain vacuolar sorting receptor 1 (VSR1) from Arabidopsis thaliana. Sci Rep, 14, 2024
9B0M	Crystal structure of Macrophage migration inhibitory factor from Plasmodium vivax Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, L-dopachrome isomerase Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-03-12 Release date: 2024-03-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of Macrophage migration inhibitory factor from Plasmodium vivax To be published
9B0K	INF2 in the Middle of F-Actin (Down state) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Palmer, N.J, Barrie, K.R, Dominguez, R. Deposit date: 2024-03-12 Release date: 2024-05-29 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Mechanisms of actin filament severing and elongation by formins Nature, 2024
9B03	INF2 in the Middle of F-Actin (Up state) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Palmer, N.J, Barrie, K.R, Dominguez, R. Deposit date: 2024-03-11 Release date: 2024-05-29 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Mechanisms of actin filament severing and elongation by formins Nature, 2024
9AZZ	Crystal structure of outer membrane lipoprotein carrier protein (LolA) from Ehrlichia ruminantium Descriptor: GLYCEROL, Outer membrane lipoprotein carrier protein LolA, TETRAETHYLENE GLYCOL Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2024-03-11 Release date: 2024-03-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of outer membrane lipoprotein carrier protein (LolA) from Ehrlichia ruminantium To be published
9AZX	Crystal structure of SARS-CoV-2 (Covid-19) Nsp3 macrodomain in complex with NDPr Descriptor: Non-structural protein 3, {(2R,3S,4R,5R)-5-[(8S)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl [(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate Authors: Wallace, S.D, Bagde, S.R, Fromme, J.C. Deposit date: 2024-03-11 Release date: 2024-05-01 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.395 Å) Cite: GS-441524-Diphosphate-Ribose Derivatives as Nanomolar Binders and Fluorescence Polarization Tracers for SARS-CoV-2 and Other Viral Macrodomains. Acs Chem.Biol., 19, 2024
9AZQ	INF2 at the Barbed End of F-Actin with Incoming Actin Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Palmer, N.J, Barrie, K.R, Dominguez, R. Deposit date: 2024-03-11 Release date: 2024-05-29 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.82 Å) Cite: Mechanisms of actin filament severing and elongation by formins Nature, 2024
9AZP	INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... Authors: Palmer, N.J, Barrie, K.R, Dominguez, R. Deposit date: 2024-03-11 Release date: 2024-05-29 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.79 Å) Cite: Mechanisms of actin filament severing and elongation by formins Nature, 2024
9AZI	NMR solution structure of cell-permeant miniature protein ZF5.3 Descriptor: Designed Zinc finger protein 5.3, ZINC ION Authors: Giudice, J.A, Kelly, M, Schepartz, A. Deposit date: 2024-03-11 Release date: 2024-05-01 Method: SOLUTION NMR Cite: Structural and mechanistic basis for efficient endosomal escape by designed mini-proteins To be published
9AZ9	Chloride Sites in Photoactive Yellow Protein (Chloride-Free Reference Structure) Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein Authors: Dyda, F, Schotte, F, Anfinrud, P, Cho, H.S. Deposit date: 2024-03-10 Release date: 2024-03-20 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (2 Å) Cite: Watching a signaling protein function: What has been learned over four decades of time-resolved studies of photoactive yellow protein. Struct Dyn., 11, 2024
9AZ7	Chloride Sites in Photoactive Yellow Protein Descriptor: 4'-HYDROXYCINNAMIC ACID, CHLORIDE ION, Photoactive yellow protein Authors: Dyda, F, Schotte, F, Anfinrud, P, Cho, H.S. Deposit date: 2024-03-10 Release date: 2024-03-20 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (2 Å) Cite: Watching a signaling protein function: What has been learned over four decades of time-resolved studies of photoactive yellow protein. Struct Dyn., 11, 2024
9AZ4	INF2 at the Barbed End of F-Actin Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Palmer, N.J, Barrie, K.R, Dominguez, R. Deposit date: 2024-03-10 Release date: 2024-05-29 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Mechanisms of actin filament severing and elongation by formins Nature, 2024
9AYY	SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5.1) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhang, Q.E, Acharya, P. Deposit date: 2024-03-08 Release date: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5.1) To Be Published

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