PDB: 46205 resultsInfo pagesStatus searchChemie searchBIRD

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8BM7	Hairpin adopted by oligonucleotide A38 found in the promoter of AUTS2 gene. Descriptor: A38 Authors: Novotny, A. Deposit date: 2022-11-10 Release date: 2023-02-22 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Structural polymorphism driven by a register shift in a CGAG-rich region found in the promoter of the neurodevelopmental regulator AUTS2 gene. Nucleic Acids Res., 51, 2023
5LCJ	In-Gel Activity-Based Protein Profiling of a Clickable Covalent Erk 1/2 Inhibitor Descriptor: Mitogen-activated protein kinase 1, SULFATE ION, [(1~{R},4~{Z})-cyclooct-4-en-1-yl] ~{N}-[4-[4-[[5-chloranyl-4-[[2-(propanoylamino)phenyl]amino]pyrimidin-2-yl]amino]pyridin-2-yl]but-3-ynyl]carbamate Authors: O'Reilly, M, Wright, D. Deposit date: 2016-06-22 Release date: 2016-07-20 Last modified: 2016-08-31 Method: X-RAY DIFFRACTION (1.78 Å) Cite: In-gel activity-based protein profiling of a clickable covalent ERK1/2 inhibitor. Mol Biosyst, 12, 2016
2F23	Crystal structure of GreA factor homolog 1 (Gfh1) protein of Thermus thermophilus Descriptor: Anti-cleavage anti-greA transcription factor gfh1 Authors: Kong, X.P, Kim, S.-S. Deposit date: 2005-11-15 Release date: 2006-05-30 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: pH-dependent conformational switch activates the inhibitor of transcription elongation. Embo J., 25, 2006
2C2L	Crystal structure of the CHIP U-box E3 ubiquitin ligase Descriptor: CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN, HSP90, NICKEL (II) ION, ... Authors: Zhang, M, Roe, S.M, Pearl, L.H. Deposit date: 2005-09-29 Release date: 2005-11-23 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Chaperoned Ubiquitylation-Crystal Structures of the Chip U Box E3 Ubiquitin Ligase and a Chip-Ubc13-Uev1A Complex Mol.Cell, 20, 2005
3CRJ	Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049 Descriptor: CHLORIDE ION, Transcription regulator Authors: Tan, K, Zhou, M, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2008-04-07 Release date: 2008-04-22 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049. To be Published
2E6O	Solution structure of the HMG box domain from human HMG-box transcription factor 1 Descriptor: HMG box-containing protein 1 Authors: Qin, X.R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-28 Release date: 2007-07-03 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the HMG box domain from human HMG-box transcription factor 1 To be published
6UJA	Integrin alpha-v beta-8 in complex with pro-TGF-beta1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Campbell, M.G, Cormier, A, Cheng, Y, Nishimura, S.L. Deposit date: 2019-10-02 Release date: 2020-02-05 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cryo-EM Reveals Integrin-Mediated TGF-beta Activation without Release from Latent TGF-beta. Cell, 180, 2020
4E6A	p38a-PIA23 complex Descriptor: (2S)-2-methoxy-3-(octadecyloxy)propyl (1R,2R,3R,4S,6S)-2,3,4-trihydroxy-6-(2-methylpropoxy)cyclohexyl hydrogen (S)-phosphate, Mitogen-activated protein kinase 14 Authors: Livnah, O, Tzarum, N, Eisenberg-Domovich, Y. Deposit date: 2012-03-15 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Lipid Molecules Induce p38 alpha Activation via a Novel Molecular Switch. J.Mol.Biol., 424, 2012
8EKB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Paranjpe, M.N, Polikanov, Y.S. Deposit date: 2022-09-20 Release date: 2022-12-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin. Nucleic Acids Res., 51, 2023
6UFX	WD repeat-containing protein 5 complexed with N-[(3,5-dimethoxyphenyl)methyl]-4'-fluoro-5-{[(2E)-2-imino-3-methyl-2,3-dihydro-1H-imidazol-1-yl]methyl}-2'-methyl[1,1'-biphenyl]-3-carboxamide (compound 13) Descriptor: N-[(3,5-dimethoxyphenyl)methyl]-4'-fluoro-5-{[(2E)-2-imino-3-methyl-2,3-dihydro-1H-imidazol-1-yl]methyl}-2'-methyl[1,1'-biphenyl]-3-carboxamide, WD repeat-containing protein 5 Authors: Rietz, T.A, Fesik, S.W, Zhao, B. Deposit date: 2019-09-25 Release date: 2020-01-01 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.015 Å) Cite: Discovery and Structure-Based Optimization of Potent and Selective WD Repeat Domain 5 (WDR5) Inhibitors Containing a Dihydroisoquinolinone Bicyclic Core. J.Med.Chem., 63, 2020
4EMA	Human peroxisome proliferator-activated receptor gamma in complex with rosiglitazone Descriptor: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL), Peroxisome proliferator-activated receptor gamma Authors: Liberato, M.V, Nascimento, A.S, Polikarpov, I. Deposit date: 2012-04-11 Release date: 2013-03-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.545 Å) Cite: Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) Gamma activators and pan-PPAR partial agonists Plos One, 7, 2012
6UIK	Discovery of fragment-inspired heterocyclic benzenesulfonmides as inhibitors of the WDR5-MYC interaction Descriptor: 5-bromo-3-chloro-N-(1-cyclopentyl-1H-imidazol-4-yl)-2-hydroxybenzene-1-sulfonamide, WD repeat domanin 5 Authors: Zhao, B. Deposit date: 2019-10-01 Release date: 2020-04-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Discovery of WD Repeat-Containing Protein 5 (WDR5)-MYC Inhibitors Using Fragment-Based Methods and Structure-Based Design. J.Med.Chem., 63, 2020
6UCS	Discovery and Structure-Based optimization of potent and selective WDR5 inhibitors containing a dihydroisoquinolinone bicyclic core Descriptor: 2-amino-3-{[(5P)-2-[(3,5-dimethoxyphenyl)methyl]-5-(4-fluoro-2-methylphenyl)-1-oxo-1,2,3,4-tetrahydroisoquinolin-7-yl]methyl}-1-methyl-1H-imidazol-3-ium, WD repeat-containing protein 5 Authors: Zhao, B. Deposit date: 2019-09-17 Release date: 2020-01-01 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Discovery and Structure-Based Optimization of Potent and Selective WD Repeat Domain 5 (WDR5) Inhibitors Containing a Dihydroisoquinolinone Bicyclic Core. J.Med.Chem., 63, 2020
4E5B	Structure of p38a MAP kinase without BOG Descriptor: Mitogen-activated protein kinase 14 Authors: Livnah, O, Eisenberg-Domovich, Y, Tzarum, N. Deposit date: 2012-03-14 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Lipid Molecules Induce p38 alpha Activation via a Novel Molecular Switch. J.Mol.Biol., 424, 2012
6UIF	Discovery of fragment-inspired heterocyclic benzenesulfonmides as inhibitors of the WDR5-MYC interaction Descriptor: 4-{[(5-bromo-3-chloro-2-hydroxyphenyl)sulfonyl]amino}-1-cyclopentyl-N-methyl-1H-imidazole-2-carboxamide, WD repeat domain 5 Authors: Zhao, B. Deposit date: 2019-09-30 Release date: 2020-04-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.603 Å) Cite: Discovery of WD Repeat-Containing Protein 5 (WDR5)-MYC Inhibitors Using Fragment-Based Methods and Structure-Based Design. J.Med.Chem., 63, 2020
2CXY	Crystal structure of the hBAF250b AT-rich interaction domain (ARID) Descriptor: BAF250b subunit Authors: Shimada, A, Niwa, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-07-01 Release date: 2006-10-10 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of the hBAF250b AT-rich interaction domain (ARID) To be Published
4EH6	Human p38 MAP kinase in complex with NP-F5 and RL87 Descriptor: Mitogen-activated protein kinase 14, N-phenylpyridine-3-carboxamide, N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine Authors: Over, B, Gruetter, C, Waldmann, H, Rauh, D. Deposit date: 2012-04-02 Release date: 2012-12-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Natural-product-derived fragments for fragment-based ligand discovery. Nat Chem, 5, 2012
6U5Y	Discovery and optimization of salicyclic acid-derived sulfonamide inhibitors of the WDR5:MYC protein-protein interaction Descriptor: 3-{[(5-bromo-3-chloro-2-hydroxyphenyl)sulfonyl]amino}-5-(1-cyanocyclobutyl)-2-hydroxy-N-methylbenzamide, WD repeat-containing protein 5 Authors: Zhao, B, Wang, F. Deposit date: 2019-08-28 Release date: 2019-12-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.532 Å) Cite: Discovery and Optimization of Salicylic Acid-Derived Sulfonamide Inhibitors of the WD Repeat-Containing Protein 5-MYC Protein-Protein Interaction. J.Med.Chem., 62, 2019
4EH7	Human p38 MAP kinase in complex with NP-F6 and RL87 Descriptor: (3-phenoxyphenyl)methanol, Mitogen-activated protein kinase 14, N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine Authors: Over, B, Gruetter, C, Waldmann, H, Rauh, D. Deposit date: 2012-04-02 Release date: 2012-12-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Natural-product-derived fragments for fragment-based ligand discovery. Nat Chem, 5, 2012
7VOP	Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit Descriptor: GATOR complex protein SEC13, IL4I1 protein, MGC154553 protein, ... Authors: Tai, L, Zhu, Y, Sun, F. Deposit date: 2021-10-14 Release date: 2022-02-02 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (8.7 Å) Cite: 8 angstrom structure of the outer rings of the Xenopus laevis nuclear pore complex obtained by cryo-EM and AI. Protein Cell, 13, 2022
4EM9	Human PPAR gamma in complex with nonanoic acids Descriptor: 3,3',3''-phosphanetriyltripropanoic acid, GLYCEROL, Peroxisome proliferator-activated receptor gamma, ... Authors: Liberato, M.V, Nascimento, A.S, Polikarpov, I. Deposit date: 2012-04-11 Release date: 2013-03-06 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) Gamma activators and pan-PPAR partial agonists Plos One, 7, 2012
6U5M	Discovery and optimization of salicyclic acid-derived sulfonamide inhibitors of the WDR5:MYC protein-protein interaction Descriptor: 5-bromo-2-hydroxy-N-[3-(methylsulfonyl)-5-(pentafluoro-lambda~6~-sulfanyl)phenyl]benzene-1-sulfonamide, WD repeat-containing protein 5 Authors: Zhao, B, Wang, F. Deposit date: 2019-08-28 Release date: 2019-12-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Discovery and Optimization of Salicylic Acid-Derived Sulfonamide Inhibitors of the WD Repeat-Containing Protein 5-MYC Protein-Protein Interaction. J.Med.Chem., 62, 2019
4EH4	Human p38 MAP kinase in complex with NP-F3 and RL87 Descriptor: Mitogen-activated protein kinase 14, N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine, phenyl(piperidin-1-yl)methanone Authors: Over, B, Gruetter, C, Waldmann, H, Rauh, D. Deposit date: 2012-04-02 Release date: 2012-12-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Natural-product-derived fragments for fragment-based ligand discovery. Nat Chem, 5, 2012
6U8B	Discovery and optimization of salicyclic acid-derived sulfonamide inhibitors of the WDR5:MYC protein-protein interaction Descriptor: 3-{[(5-bromo-2-methoxyphenyl)sulfonyl]amino}-5-chloro-2-hydroxybenzoic acid, WD repeat-containing protein 5 Authors: Zhao, B, Wang, F. Deposit date: 2019-09-04 Release date: 2019-12-04 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.261 Å) Cite: Discovery and Optimization of Salicylic Acid-Derived Sulfonamide Inhibitors of the WD Repeat-Containing Protein 5-MYC Protein-Protein Interaction. J.Med.Chem., 62, 2019
8F24	Mirror-image RNA octamer containing 2'-OMe-L-uridine Descriptor: Mirror-image RNA 0G-XEC-0G-0U-0A-0C-0A-0C, SULFATE ION Authors: Dantsu, Y, Zhang, W. Deposit date: 2022-11-07 Release date: 2023-04-12 Last modified: 2024-04-17 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Derivatization of Mirror-Image l-Nucleic Acids with 2'-OMe Modification for Thermal and Structural Stabilization. Chembiochem, 24, 2023

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