PDB: 30672 resultsInfo pagesStatus searchChemie searchBIRD

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4O8J	Crystal structure of RtcA, the RNA 3'-terminal phosphate cyclase from Pyrococcus horikoshii, in complex with rACAAA3'phosphate and adenine. Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE, RNA, ... Authors: Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T. Deposit date: 2013-12-27 Release date: 2014-09-10 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structure of RNA 3'-phosphate cyclase bound to substrate RNA. Rna, 20, 2014
5NEW	RNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimer Descriptor: RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*U)-3'), RNA-binding protein Hfq, ... Authors: Schulz, E.C, Barabas, O. Deposit date: 2017-03-12 Release date: 2017-10-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.511 Å) Cite: Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq. Sci Rep, 7, 2017
3MJB	Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate Descriptor: Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SULFATE ION Authors: Kieft, J.S, Golden, B.L, Costantino, D.A, Chase, E. Deposit date: 2010-04-12 Release date: 2010-05-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Identification and characterization of anion binding sites in RNA. Rna, 16, 2010
3MJ3	Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate Descriptor: Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION Authors: Kieft, J.S, Chase, E, Costantino, D.A, Golden, B.L. Deposit date: 2010-04-12 Release date: 2010-05-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Identification and characterization of anion binding sites in RNA. Rna, 16, 2010
3MJA	Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate, structure #2 Descriptor: Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION Authors: Kieft, J.S, Golden, B.L, Costantino, D.A, Chase, E. Deposit date: 2010-04-12 Release date: 2010-05-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Identification and characterization of anion binding sites in RNA. Rna, 16, 2010
3EGN	C-terminal RNA Recognition Motif of the U11/U12 65K Protein Descriptor: RNA-binding protein 40 Authors: Netter, C, Wahl, M.C. Deposit date: 2008-09-11 Release date: 2009-06-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Functional stabilization of an RNA recognition motif by a noncanonical N-terminal expansion Rna, 15, 2009
7UME	DENV1 SLA top stemloop RNA (DenvTSL) Descriptor: RNA (28-MER) Authors: Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-04-06 Release date: 2022-07-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of the dengue virus RNA promoter. Rna, 28, 2022
5NBB	Structure of the C-terminal domain of the Escherichia Coli ProQ RNA binding protein Descriptor: RNA chaperone ProQ Authors: Gonzales, G, Hardwick, S, Maslen, S, Skehel, M, Holmqvist, E, Vogel, J, Bateman, A, Luisi, B, Broadhurst, R. Deposit date: 2017-03-01 Release date: 2017-05-03 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure of the Escherichia coli ProQ RNA-binding protein. RNA, 23, 2017
5NB9	Structure of the N-terminal domain of the Escherichia Coli ProQ RNA binding protein Descriptor: RNA chaperone ProQ Authors: Gonzales, G, Hardwick, S, Maslen, S, Skehel, M, Holmqvist, E, Vogel, J, Bateman, A, Luisi, B, Broadhurst, R. Deposit date: 2017-03-01 Release date: 2017-05-03 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure of the Escherichia coli ProQ RNA-binding protein. RNA, 23, 2017
5NXT	Wobble base paired RNA double helix Descriptor: RNA (5'-R(*UP*GP*UP*UP*CP*UP*CP*UP*AP*CP*GP*AP*AP*GP*AP*AP*CP*A)-3') Authors: Garg, A, Heinemann, U. Deposit date: 2017-05-10 Release date: 2017-11-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.379 Å) Cite: A novel form of RNA double helix based on G·U and C·A+ wobble base pairing. RNA, 24, 2018
4O89	Crystal structure of RtcA, the RNA 3'-terminal phosphate cyclase from Pyrococcus horikoshii. Descriptor: CITRIC ACID, RNA 3'-terminal phosphate cyclase Authors: Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T. Deposit date: 2013-12-26 Release date: 2014-09-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of RNA 3'-phosphate cyclase bound to substrate RNA. Rna, 20, 2014
1Z43	Crystal structure of 7S.S SRP RNA of M. jannaschii Descriptor: RNA (101-MER) Authors: Hainzl, T, Huang, S, Sauer-Eriksson, A.E. Deposit date: 2005-03-15 Release date: 2005-06-14 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insights into SRP RNA: An induced fit mechanism for SRP assembly Rna, 11, 2005
6GE1	Solution structure of the r(UGGUGGU)4 RNA quadruplex Descriptor: RNA (5'-R(*UP*GP*GP*UP*GP*GP*U)-3') Authors: Andralojc, W, Gdaniec, Z. Deposit date: 2018-04-25 Release date: 2018-10-31 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3' terminus. RNA, 25, 2019
7UMD	DENV1 SLA three-way junction RNA (DenvSLAsh) Descriptor: RNA (40-MER) Authors: Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-04-06 Release date: 2022-07-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of the dengue virus RNA promoter. Rna, 28, 2022
7UMC	DENV1 SLA RNA (DenvSLATL) Descriptor: RNA (70-MER) Authors: Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-04-06 Release date: 2022-07-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of the dengue virus RNA promoter. Rna, 28, 2022
7EXY	T-hairpin structure found in the RNA element involved in the piRNA biogenesis Descriptor: RNA (5'-R(*UP*UP*GP*GP*UP*UP*UP*GP*AP*UP*UP*CP*CP*AP*AP*G)-3') Authors: Takase, N, Kawai, G. Deposit date: 2021-05-29 Release date: 2022-03-02 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: T-hairpin structure found in the RNA element involved in piRNA biogenesis. Rna, 28, 2022
3CJZ	Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m22G:A pairs Descriptor: RNA (5'-R(*GP*GP*AP*CP*GP*(M2G)P*AP*CP*GP*UP*CP*CP*U)-3') Authors: Pallan, P.S, Kreutz, C, Bosio, S, Micura, R, Egli, M. Deposit date: 2008-03-14 Release date: 2008-10-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Effects of N2,N2-dimethylguanosine on RNA structure and stability: crystal structure of an RNA duplex with tandem m2 2G:A pairs. Rna, 14, 2008
2L8F	Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon Descriptor: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3') Authors: Lerman, Y, Kennedy, S.D, Turner, D.H. Deposit date: 2011-01-11 Release date: 2011-08-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions. Rna, 17, 2011
3D0M	X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex Descriptor: RNA (5'-R(*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), SULFATE ION Authors: Rypniewski, W, Adamiak, D.A, Milecki, J, Adamiak, R.W. Deposit date: 2008-05-02 Release date: 2008-09-09 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex. Rna, 14, 2008
3CZW	X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex Descriptor: RNA (5'-R(*G*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'), SULFATE ION Authors: Rypniewski, W, Adamiak, D.A, Milecki, J, Adamiak, R.W. Deposit date: 2008-04-30 Release date: 2008-09-09 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Noncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex. Rna, 14, 2008
1MHK	Crystal Structure Analysis of a 26mer RNA molecule, representing a new RNA motif, the hook-turn Descriptor: BROMIDE ION, RNA 12-mer BCh12, RNA 14-mer BCh12 Authors: Szep, S, Wang, J, Moore, P.B. Deposit date: 2002-08-20 Release date: 2002-09-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The crystal structure of a 26-nucleotide RNA containing a hook-turn RNA, 9, 2003
2R1S	Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.4 A (Br1) Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION Authors: Timsit, Y, Bombard, S. Deposit date: 2007-08-23 Release date: 2007-09-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction. Rna, 13, 2007
4XQ0	Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to beryllium fluoride Descriptor: MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, TETRAETHYLENE GLYCOL Authors: Ghosh, A, Lima, C.D. Deposit date: 2015-01-18 Release date: 2015-03-04 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1. Rna, 21, 2015
4XPZ	Structure of fission yeast RNA polymerase II CTD phosphatase Fcp1-R271A bound to aluminum fluoride Descriptor: ALUMINUM FLUORIDE, MAGNESIUM ION, RNA polymerase II subunit A C-terminal domain phosphatase, ... Authors: Ghosh, A, Lima, C.D. Deposit date: 2015-01-18 Release date: 2015-03-04 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Genetic and structural analysis of the essential fission yeast RNA polymerase II CTD phosphatase Fcp1. Rna, 21, 2015
4WAN	Crystal structure of Msl5 protein in complex with RNA at 1.8 A Descriptor: ACETATE ION, Branchpoint-bridging protein, GLYCEROL, ... Authors: Jacewicz, A, Smith, P, Chico, L, Schwer, B, Shuman, S. Deposit date: 2014-08-29 Release date: 2014-12-17 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs. Rna, 21, 2015

 

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