PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

---

1VTA	THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATURE Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*C)-3') Authors: Eisenstein, M, Frolow, F, Shakked, Z, Rabinovich, D. Deposit date: 1991-04-11 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The structure and hydration of the A-DNA fragment d(GGGTACCC) at room temperature and low temperature. Nucleic Acids Res., 18, 1990
2HIV	ATP-dependent DNA ligase from S. solfataricus Descriptor: Thermostable DNA ligase Authors: Pascal, J.M, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.05 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
2HIX	ATP dependent DNA ligase from S. solfataricus bound to ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Thermostable DNA ligase Authors: Pascal, J.M, Ellenberger, T. Deposit date: 2006-06-29 Release date: 2006-11-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.87 Å) Cite: A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
7JSF	Adeno-Associated Virus Helicase domain Heptamer with ssDNA Descriptor: DNA (5'-D(P*TP*TP*TP*T)-3'), Protein Rep68 Authors: Escalante, C.R. Deposit date: 2020-08-14 Release date: 2020-12-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: The Cryo-EM structure of AAV2 Rep68 in complex with ssDNA reveals a malleable AAA+ machine that can switch between oligomeric states. Nucleic Acids Res., 48, 2020
6D4L	Joint X-ray/neutron structure of DNA oligonucleotide d(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5 Descriptor: DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3'), MAGNESIUM ION Authors: Kovalevsky, A, Huang, Z, Vandavasi, V.G. Deposit date: 2018-04-18 Release date: 2018-10-17 Last modified: 2023-10-04 Method: NEUTRON DIFFRACTION (1.56 Å), X-RAY DIFFRACTION Cite: Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA. Structure, 26, 2018
2F5S	Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1 Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ... Authors: Banerjee, A, Santos, W.L, Verdine, G.L. Deposit date: 2005-11-26 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
3N6S	Crystal structure of human mitochondrial mTERF in complex with a 15-mer DNA encompassing the tRNALeu(UUR) binding sequence Descriptor: DNA (5'-D(*AP*TP*GP*GP*CP*AP*GP*AP*GP*CP*CP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*CP*GP*GP*GP*CP*TP*CP*TP*GP*CP*CP*A)-3'), Transcription termination factor, ... Authors: Jimenez-Menendez, N, Fernandez-Millan, P, Rubio-Cosials, A, Arnan, C, Montoya, J, Jacobs, H.T, Bernado, P, Coll, M, Uson, I, Sola, M. Deposit date: 2010-05-26 Release date: 2010-06-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Human mitochondrial mTERF wraps around DNA through a left-handed superhelical tandem repeat. Nat.Struct.Mol.Biol., 17, 2010
2Q6T	Crystal structure of the Thermus aquaticus DnaB monomer Descriptor: DnaB replication fork helicase, SULFATE ION Authors: Bailey, S, Eliason, W.K, Steitz, T.A. Deposit date: 2007-06-05 Release date: 2007-07-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The crystal structure of the Thermus aquaticus DnaB helicase monomer. Nucleic Acids Res., 35, 2007
1DNE	MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 2 Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3'), NETROPSIN Authors: Coll, M, Aymami, J, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J. Deposit date: 1988-09-14 Release date: 1989-01-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Molecular structure of the netropsin-d(CGCGATATCGCG) complex: DNA conformation in an alternating AT segment. Biochemistry, 28, 1989
6AP4	Crystal structure of the DNA polymerase III subunit beta from Acinetobacter baumannii Descriptor: DNA polymerase III subunit beta, MAGNESIUM ION Authors: McGrath, A.E, Oakley, A.J. Deposit date: 2017-08-16 Release date: 2017-12-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Crystal structures and biochemical characterization of DNA sliding clamps from three Gram-negative bacterial pathogens. J. Struct. Biol., 204, 2018
1M3Q	Crystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanine Descriptor: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(DRZ)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-AMINOGUANINE, ... Authors: Chung, S.J, Verdine, G.L. Deposit date: 2002-06-28 Release date: 2004-02-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of End Products Resulting from Lesion Processing by a DNA Glycosylase/Lyase Chem.Biol., 11, 2004
313D	Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE HOOGSTEEN BASE PAIR Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Mooers, B.H.M, Eichman, B.F, Ho, P.S. Deposit date: 1997-02-04 Release date: 1997-08-05 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.68 Å) Cite: The structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals. J.Mol.Biol., 269, 1997
358D	CRYSTAL STRUCTURE OF THE 2:1 NETROPSIN-DNA DECAMER D(CBRCCCCIIIII) COMPLEX WITH END-TO-END BINDING Descriptor: DNA (5'-D(*CP*(CBR)P*CP*CP*CP*IP*IP*IP*IP*I)-3'), NETROPSIN Authors: Mitra, S.N, Chen, X, Sundaralingam, M. Deposit date: 1997-10-20 Release date: 2000-05-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A novel end-to-end binding of two netropsins to the DNA decamers d(CCCCCIIIII)2, d(CCCBr5CCIIIII)2and d(CBr5CCCCIIIII)2. Nucleic Acids Res., 26, 1998
1J4W	COMPLEX OF THE KH3 and KH4 DOMAINS OF FBP WITH A SINGLE_STRANDED 29mer DNA OLIGONUCLEOTIDE FROM THE FUSE ELEMENT OF THE C-MYC ONCOGENE Descriptor: DNA (5'-D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*GP*T)-3'), FUSE binding protein Authors: Clore, G.M, Braddock, D.T. Deposit date: 2001-11-30 Release date: 2002-03-06 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure and dynamics of KH domains from FBP bound to single-stranded DNA. Nature, 415, 2002
2HMI	HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX Descriptor: DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3'), FAB FRAGMENT OF MONOCLONAL ANTIBODY 28, ... Authors: Ding, J, Arnold, E. Deposit date: 1998-04-10 Release date: 1998-10-14 Last modified: 2021-11-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolution. J.Mol.Biol., 284, 1998
355D	THE B-DNA DODECAMER AT HIGH RESOLUTION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE Authors: Hu, L.D, Shui, X, McFail-Isom, L, Williams, G.G. Deposit date: 1997-10-07 Release date: 1997-10-13 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The B-DNA dodecamer at high resolution reveals a spine of water on sodium. Biochemistry, 37, 1998
4FXD	Crystal structure of yeast DNA polymerase alpha bound to DNA/RNA Descriptor: DNA (5'-D(*TP*TP*TP*TP*CP*GP*CP*TP*GP*CP*CP*CP*GP*CP*CP*T)-3'), DNA polymerase alpha catalytic subunit A, RNA (5'-R(*AP*GP*GP*CP*GP*GP*GP*CP*AP*G)-3') Authors: Perera, R.L, Torella, R, Klinge, S, Kilkenny, M.L, Maman, J.D, Pellegrini, L. Deposit date: 2012-07-03 Release date: 2013-02-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Mechanism for priming DNA synthesis by yeast DNA Polymerase alpha eLife, 2, 2013
1E7J	HMG-D complexed to a bulge DNA Descriptor: DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3'), HIGH MOBILITY GROUP PROTEIN D Authors: Cerdan, R, Payet, D, Yang, J.-C, Travers, A.A, Neuhaus, D. Deposit date: 2000-08-29 Release date: 2001-03-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Hmg-D Complexed to a Bulge DNA: An NMR Model Protein Sci., 10, 2001
2ELG	The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, SODIUM ION, ... Authors: Ohishi, H, Tozuka, Y, Zhou, D.Y, Ishida, T, Nakatani, K. Deposit date: 2007-03-27 Release date: 2008-04-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1 Å) Cite: The rare crystallographic structure of d(CGCGCG)(2): The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)(2) at 10 degrees C Biochem.Biophys.Res.Commun., 358, 2007
6XAH	Structure of a Stable Interstrand DNA Crosslink Involving an dA Amino Group and an Abasic Site Descriptor: DNA (5'-D(*TP*AP*GP*AP*TP*GP*AP*AP*CP*(AAB)P*TP*AP*GP*AP*CP*AP*TP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*TP*CP*TP*AP*AP*GP*TP*TP*CP*AP*TP*CP*TP*A)-3') Authors: Kellum Jr, A.H, Qiu, D, Voehler, M.W, Martin, W.J, Gates, K.S, Stone, M.P. Deposit date: 2020-06-04 Release date: 2021-05-05 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of a Stable Interstrand DNA Cross-Link Involving a beta- N -Glycosyl Linkage Between an N 6 -dA Amino Group and an Abasic Site. Biochemistry, 60, 2021
6VJW	Crystal structure of WT hMBD4 complexed with T:G mismatch DNA Descriptor: DNA (5'-D(*CP*CP*AP*GP*CP*GP*(ORP)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 Authors: Jung, H, Lee, S. Deposit date: 2020-01-17 Release date: 2021-01-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Catalytic mechanism of the mismatch-specific DNA glycosylase methyl-CpG-binding domain 4. Biochem.J., 477, 2020
2G7H	Structure of an O6-Methylguanine DNA Methyltransferase from Methanococcus jannaschii (MJ1529) Descriptor: Methylated-DNA--protein-cysteine methyltransferase Authors: Roberts, A. Deposit date: 2006-02-28 Release date: 2006-08-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structural studies of MJ1529, an O(6)-methylguanine-DNA methyltransferase Magn.Reson.Chem., 44, 2006
3VW3	Antibody 64M-5 Fab in complex with a double-stranded DNA (6-4) photoproduct Descriptor: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), COBALT HEXAMMINE(III), ... Authors: Yokoyama, H, Mizutani, R, Satow, Y. Deposit date: 2012-07-30 Release date: 2013-03-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of a double-stranded DNA (6-4) photoproduct in complex with the 64M-5 antibody Fab Acta Crystallogr.,Sect.D, 69, 2013
1D16	STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*GP*TP*TP*TP*TP*CP*GP*CP*GP*CP*G)-3') Authors: Chattopadhyaya, R, Grzeskowiak, K, Dickerson, R.E. Deposit date: 1988-04-12 Release date: 1989-01-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops. J.Mol.Biol., 211, 1990
3DW9	SgrAI with cognate DNA and manganese bound Descriptor: DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3'), MANGANESE (II) ION, SgraIR restriction enzyme Authors: Dunten, P.W, Horton, N.C, Little, E.J. Deposit date: 2008-07-21 Release date: 2008-08-19 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res., 36, 2008

<77787980818283848586878889909192>